BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fmgV10m22f (624 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC2F12.04 |rpl1701|rpl17, rpl17-1|60S ribosomal protein L17|Sc... 198 7e-52 SPCC364.03 |rpl1702|rpl17-2, rpl17|60S ribosomal protein L17|Sch... 196 2e-51 SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces... 29 0.72 SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa... 27 1.7 SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 27 2.9 SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyce... 25 8.9 SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro... 25 8.9 >SPBC2F12.04 |rpl1701|rpl17, rpl17-1|60S ribosomal protein L17|Schizosaccharomyces pombe|chr 2|||Manual Length = 187 Score = 198 bits (482), Expect = 7e-52 Identities = 92/163 (56%), Positives = 115/163 (70%) Frame = +2 Query: 38 MGRYSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPF 217 M RYS P K KARG+ LR HFKN+ E A I M L++A +L NV E K+ +PF Sbjct: 1 MVRYSASPALETKCAKARGAYLRTHFKNSREVAFTINGMSLKKAFIFLDNVKEHKQAVPF 60 Query: 218 RRFNGGVGRCAQAKQFGTTQGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVN 397 RRFNGGVGR AQ K+FG TQ RWP KS +F LL+NAE+NA+ K LD+D+L+I H+QVN Sbjct: 61 RRFNGGVGRTAQGKEFGVTQARWPVKSVKFFYDLLKNAEANAEAKGLDMDKLIIKHVQVN 120 Query: 398 RAPCLRRRTYRAHGRINPYMSSPCHIEVCLSEREDAVARVAPT 526 AP RRRTYRAHGR+ Y+SSP HIE+ ++E E+AV + T Sbjct: 121 AAPKQRRRTYRAHGRVTAYLSSPSHIEIIVAEEEEAVPKANDT 163 >SPCC364.03 |rpl1702|rpl17-2, rpl17|60S ribosomal protein L17|Schizosaccharomyces pombe|chr 3|||Manual Length = 187 Score = 196 bits (479), Expect = 2e-51 Identities = 92/163 (56%), Positives = 114/163 (69%) Frame = +2 Query: 38 MGRYSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPF 217 M RYS P K KARG+ LR HFKN+ E A I M L++A +L NV E K+ +PF Sbjct: 1 MVRYSAAPALETKCAKARGAYLRTHFKNSREVAFTINGMNLKKAFIFLDNVKEHKQAVPF 60 Query: 218 RRFNGGVGRCAQAKQFGTTQGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVN 397 RRFNGGVGR AQ K+FG TQ RWP KS F LL+NAE+NA+ K LD+D+L+I H+QVN Sbjct: 61 RRFNGGVGRTAQGKEFGVTQARWPVKSVNFFYDLLKNAEANAEAKGLDMDKLIIKHVQVN 120 Query: 398 RAPCLRRRTYRAHGRINPYMSSPCHIEVCLSEREDAVARVAPT 526 AP RRRTYRAHGR+ Y+SSP HIE+ ++E E+AV + T Sbjct: 121 AAPKQRRRTYRAHGRVTAYLSSPSHIEIIVAEEEEAVPKANDT 163 >SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces pombe|chr 2|||Manual Length = 681 Score = 28.7 bits (61), Expect = 0.72 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 3/43 (6%) Frame = +1 Query: 367 QASYRPHSGKSRALPTQTYIPCSRS---HQPLHVVSLPHRSMS 486 Q+ + S K RA +T + ++S HQ +H +S PH S S Sbjct: 333 QSPFLKKSDKERANLNKTMVSINKSINIHQSIHEISCPHHSSS 375 >SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosaccharomyces pombe|chr 1|||Manual Length = 941 Score = 27.5 bits (58), Expect = 1.7 Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%) Frame = +2 Query: 98 NLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEK-KECI 211 NLRV K T ++ +++ P + RYLK ++E K+C+ Sbjct: 102 NLRVSKKKTSKSDVSMAGFPFFKLDRYLKILVEDLKKCV 140 >SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Schizosaccharomyces pombe|chr 2|||Manual Length = 1958 Score = 26.6 bits (56), Expect = 2.9 Identities = 11/28 (39%), Positives = 18/28 (64%) Frame = -2 Query: 275 VLCQTALLEHSDQRRR*SDGMEYTLSFQ 192 ++C TA+L+H D RR G+ + L F+ Sbjct: 846 IVCNTAVLDHWDITRRIEYGIAHILCFR 873 >SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyces pombe|chr 2|||Manual Length = 415 Score = 25.0 bits (52), Expect = 8.9 Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 1/31 (3%) Frame = -3 Query: 211 NTLFLFNHVFEVTNSTTERHLSDCHCGL-IC 122 N L F V + T + ++DC CGL +C Sbjct: 204 NLGILLKKEFRVRHMKTPQQINDCDCGLHVC 234 >SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 240 Score = 25.0 bits (52), Expect = 8.9 Identities = 12/36 (33%), Positives = 23/36 (63%) Frame = +2 Query: 95 SNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKK 202 +N ++ K+ ETA A+RKM + +R L+ + ++K Sbjct: 73 TNYKILQKSNDETAQAMRKMQDQARLRDLQKIRQQK 108 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,492,400 Number of Sequences: 5004 Number of extensions: 48889 Number of successful extensions: 129 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 126 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 129 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 275671126 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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