Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10m20r
(696 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 324 3e-89
SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.) 188 4e-48
SB_9825| Best HMM Match : EFG_C (HMM E-Value=1.3e-33) 112 2e-25
SB_12004| Best HMM Match : EFG_C (HMM E-Value=1.2e-15) 84 9e-17
SB_36048| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.031
SB_19451| Best HMM Match : EFG_C (HMM E-Value=1.8e-13) 33 0.17
SB_3585| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.51
SB_59557| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_44930| Best HMM Match : PCMT (HMM E-Value=3.1e-09) 28 6.3
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_59638| Best HMM Match : HNF-1_N (HMM E-Value=0) 28 8.3
SB_12373| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 833
Score = 324 bits (797), Expect = 3e-89
Identities = 152/186 (81%), Positives = 161/186 (86%)
Frame = -2
Query: 695 DCSKGVQYLNEIKDSVVAGFQWAAKEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIP 516
D SKGVQYLNEIKDSVVAGFQWA KEG + +EN+RGVRFNI+DVTLH DAIHRGGGQIIP
Sbjct: 639 DVSKGVQYLNEIKDSVVAGFQWATKEGPLCDENVRGVRFNIHDVTLHADAIHRGGGQIIP 698
Query: 515 TTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFI 336
T RR LYAC+LTA+P L+EPVY EIQCPE AVGGIYGVLNRRRG V EES VAGTPMFI
Sbjct: 699 TARRVLYACMLTAKPCLLEPVYSVEIQCPESAVGGIYGVLNRRRGQVLEESNVAGTPMFI 758
Query: 335 VKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDPCEPQSKPYNVVQETRKRKG 156
VKAYLPV ESFGFTADLRS TGGQAFPQCVFDHWQVLPGD + S P VV TRKRKG
Sbjct: 759 VKAYLPVMESFGFTADLRSKTGGQAFPQCVFDHWQVLPGDVHDLASMPGQVVANTRKRKG 818
Query: 155 LKEGLP 138
LKEG+P
Sbjct: 819 LKEGIP 824
>SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 809
Score = 188 bits (458), Expect = 4e-48
Identities = 80/155 (51%), Positives = 109/155 (70%)
Frame = -2
Query: 671 LNEIKDSVVAGFQWAAKEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYA 492
LN +KDS++ GFQWA +EG + +E +R V+F I D + + IHRGGGQIIPT RR Y+
Sbjct: 627 LNTVKDSIIQGFQWATREGPLCDEPIRNVKFKILDAVIAGEPIHRGGGQIIPTARRVAYS 686
Query: 491 CLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVN 312
L A PRLMEP + E+Q P V +Y VL RRRGHV +++ V G+P++ +KA++P
Sbjct: 687 AFLMATPRLMEPYFFVEVQAPADCVSSVYTVLARRRGHVTQDAPVPGSPLYTIKAFIPAI 746
Query: 311 ESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDPCE 207
+SFGF DLR++T GQAF VF HWQ++PGDP +
Sbjct: 747 DSFGFETDLRTHTQGQAFCLSVFHHWQIVPGDPLD 781
>SB_9825| Best HMM Match : EFG_C (HMM E-Value=1.3e-33)
Length = 119
Score = 112 bits (270), Expect = 2e-25
Identities = 47/91 (51%), Positives = 65/91 (71%)
Frame = -2
Query: 479 AQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFG 300
A PRLMEP + E+Q P V +Y VL RRRGHV +++ V G+P++ +KA++P +SFG
Sbjct: 1 ATPRLMEPYFFVEVQAPADCVSSVYTVLARRRGHVTQDAPVPGSPLYTIKAFIPAIDSFG 60
Query: 299 FTADLRSNTGGQAFPQCVFDHWQVLPGDPCE 207
F DLR++T GQAF VF HWQ++PGDP +
Sbjct: 61 FETDLRTHTQGQAFCLSVFHHWQIVPGDPLD 91
>SB_12004| Best HMM Match : EFG_C (HMM E-Value=1.2e-15)
Length = 549
Score = 84.2 bits (199), Expect = 9e-17
Identities = 40/89 (44%), Positives = 53/89 (59%), Gaps = 1/89 (1%)
Frame = -2
Query: 476 QP-RLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFG 300
QP RLM +Y C IQ +G +Y V+ RR G V E G+ +F V+A LPV ESFG
Sbjct: 407 QPMRLMAAMYTCHIQATAEVLGRMYAVIARREGRVLSEEMKEGSDVFDVEAVLPVAESFG 466
Query: 299 FTADLRSNTGGQAFPQCVFDHWQVLPGDP 213
F+ ++R T G A PQ +F HW+ + DP
Sbjct: 467 FSEEIRKRTSGLANPQLMFSHWEAIDLDP 495
>SB_36048| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 312
Score = 35.9 bits (79), Expect = 0.031
Identities = 23/60 (38%), Positives = 30/60 (50%)
Frame = -3
Query: 319 LSMSRSVLLPICVPTPADRPSRSAYSTIGRSSLETRANLRASPTTLYRKRERGKD*RKVS 140
+S + L P+ VPTPA R S + RS +TRAN+R SP +RG K S
Sbjct: 157 ISSTPQTLSPVSVPTPATR------SVLKRSPGKTRANIRGSPRYHDHSHQRGSPKTKTS 210
>SB_19451| Best HMM Match : EFG_C (HMM E-Value=1.8e-13)
Length = 238
Score = 33.5 bits (73), Expect = 0.17
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = -2
Query: 416 GGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQ 264
G + +NRR G V G F + A +P+N+ FG+ +LRS T G+
Sbjct: 155 GTVIAGVNRRHGQVTGTDANEG--YFTLFAEVPLNDMFGYATELRSQTQGK 203
>SB_3585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1117
Score = 31.9 bits (69), Expect = 0.51
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -2
Query: 581 FNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYL 447
FN V L + R +I+PT RR + LLT+ +PVY+
Sbjct: 526 FNKLGVFLGLAEVRRSLQEIVPTQRRKAFVALLTSTVNAKQPVYI 570
>SB_59557| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1109
Score = 28.7 bits (61), Expect = 4.8
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = -3
Query: 283 VPTPADRPSRSAYSTIGRSSLETRANLRASPTTLYRKRERGKD*RKVSQ 137
+PT ++ SRS+ G S TR R + R R+RGK+ +S+
Sbjct: 440 LPTEKEKTSRSSSELSGDSQGSTRPRCRPAEPEGTRDRKRGKESESLSK 488
>SB_44930| Best HMM Match : PCMT (HMM E-Value=3.1e-09)
Length = 283
Score = 28.3 bits (60), Expect = 6.3
Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Frame = +1
Query: 235 QWSNTHCGKACPPVLE--RKSAVKPNDSL 315
Q+ +CG ACPP E KS VK N L
Sbjct: 159 QYDRVYCGAACPPDFEDYMKSLVKVNGIL 187
>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6489
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = -3
Query: 373 SKSPRWQVHLCSL*RPTYLSMSRSVLLPICVPTPADRPSRSAYSTIGRSSL 221
+K P + L SL P + S S L P+P +PS S I +S++
Sbjct: 3074 NKPPEYSTVLASLSTPKEVHQSASEPLKRVSPSPGGKPSDKVSSVISQSTI 3124
>SB_59638| Best HMM Match : HNF-1_N (HMM E-Value=0)
Length = 808
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Frame = -2
Query: 230 VLPGDPCEPQS-KPYNVVQETRK 165
+LP PCEP S KPY E R+
Sbjct: 65 ILPASPCEPDSPKPYTPESEGRE 87
>SB_12373| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 76
Score = 27.9 bits (59), Expect = 8.3
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +1
Query: 478 AVSRHAYKHLLVVGMIWPPPLWMA 549
A+ +H HL + +WP WMA
Sbjct: 13 ALRKHQCSHLFTIKRVWPVTRWMA 36
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,334,027
Number of Sequences: 59808
Number of extensions: 525787
Number of successful extensions: 1305
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1302
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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