Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10m20f
(633 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2, p... 215 3e-56
At3g22980.1 68416.m02898 elongation factor Tu family protein sim... 111 3e-25
At1g06220.2 68414.m00656 elongation factor Tu family protein sim... 97 1e-20
At1g06220.1 68414.m00655 elongation factor Tu family protein sim... 97 1e-20
At5g25230.1 68418.m02991 elongation factor Tu family protein tra... 95 3e-20
At5g39900.1 68418.m04839 GTP-binding protein LepA, putative GTP-... 89 2e-18
At5g13650.2 68418.m01585 elongation factor family protein contai... 85 3e-17
At5g08650.1 68418.m01029 GTP-binding protein LepA, putative 84 6e-17
At5g13650.1 68418.m01584 elongation factor family protein contai... 83 1e-16
At1g62750.1 68414.m07082 elongation factor Tu family protein sim... 80 1e-15
At2g45030.1 68415.m05606 mitochondrial elongation factor, putati... 69 3e-12
At1g45332.1 68414.m05195 mitochondrial elongation factor, putati... 69 3e-12
At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA) ide... 53 1e-07
At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E... 37 0.010
At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha ... 36 0.030
At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,... 36 0.030
At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha ... 36 0.030
At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha ... 36 0.030
At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha ... 36 0.030
At1g17220.1 68414.m02098 translation initiation factor IF-2, chl... 33 0.12
At4g11160.1 68417.m01808 translation initiation factor IF-2, mit... 31 0.48
At3g20280.2 68416.m02570 PHD finger family protein contains Pfam... 31 0.84
At3g20280.1 68416.m02569 PHD finger family protein contains Pfam... 31 0.84
At2g31060.1 68415.m03790 elongation factor family protein contai... 31 0.84
At5g17810.1 68418.m02088 homeobox-leucine zipper transcription f... 30 1.5
At1g04220.1 68414.m00412 beta-ketoacyl-CoA synthase, putative St... 30 1.5
At1g32120.1 68414.m03952 expressed protein contains Pfam profile... 29 1.9
At1g21160.1 68414.m02646 eukaryotic translation initiation facto... 29 1.9
At3g03660.1 68416.m00369 homeobox-leucine zipper transcription f... 29 2.6
At3g24390.1 68416.m03063 Ulp1 protease family protein contains P... 28 4.5
At3g28790.1 68416.m03593 expressed protein 27 7.8
At3g08670.1 68416.m01007 expressed protein 27 7.8
At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,... 27 7.8
At1g12080.2 68414.m01397 expressed protein 27 7.8
At1g12080.1 68414.m01396 expressed protein 27 7.8
>At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2,
putative similar to ELONGATION FACTOR 2 GB:O14460 from
[Schizosaccharomyces pombe]
Length = 843
Score = 215 bits (524), Expect = 3e-56
Identities = 112/186 (60%), Positives = 133/186 (71%)
Frame = +3
Query: 75 MVNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTR 254
MV FT DE+R +MD K NIRNMSVIAHVDHGKSTLTDSLV+ AGIIA AG+ R TDTR
Sbjct: 1 MVKFTADELRRIMDYKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTR 60
Query: 255 KDEQDRCITIKSTAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVT 434
DE +R ITIKST IS+++E+ ++ L T R+ +E +LINLIDSPGHVDFSSEVT
Sbjct: 61 ADEAERGITIKSTGISLYYEMTDESLKSFTG--ARDGNE--YLINLIDSPGHVDFSSEVT 116
Query: 435 AALRVTDGALXXXXXXXXXXXQTETVLRQAIAERIKPILFMNKMDRXXXXXXXXXXXXYQ 614
AALR+TDGAL QTETVLRQA+ ERI+P+L +NKMDR YQ
Sbjct: 117 AALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQ 176
Query: 615 TFQRIV 632
TF R++
Sbjct: 177 TFSRVI 182
>At3g22980.1 68416.m02898 elongation factor Tu family protein
similar to eukaryotic translation elongation factor 2
GB:NP_001952 [Homo sapiens]
Length = 1015
Score = 111 bits (268), Expect = 3e-25
Identities = 67/172 (38%), Positives = 94/172 (54%), Gaps = 2/172 (1%)
Frame = +3
Query: 123 RNIRNMSVIAHVDHGKSTLTDSLVSKAG--IIAGARAGETRFTDTRKDEQDRCITIKSTA 296
R +RN+ ++AHVDHGK+TL D L++ +G ++ AG+ RF D +EQ R IT+KS++
Sbjct: 7 RKVRNICILAHVDHGKTTLADHLIASSGGGVLHPRLAGKLRFMDYLDEEQRRAITMKSSS 66
Query: 297 ISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXX 476
IS+ + K + +NLIDSPGH+DF SEV+ A R++DGAL
Sbjct: 67 ISLKY--------------------KDYSLNLIDSPGHMDFCSEVSTAARLSDGALVLVD 106
Query: 477 XXXXXXXQTETVLRQAIAERIKPILFMNKMDRXXXXXXXXXXXXYQTFQRIV 632
QT VLRQA E++ P L +NK+DR Y RIV
Sbjct: 107 AVEGVHIQTHAVLRQAWIEKLTPCLVLNKIDRLIFELRLSPMEAYTRLIRIV 158
>At1g06220.2 68414.m00656 elongation factor Tu family protein
similar to Cryptosporidium parvum elongation factor-2
GB:U21667 GI:706974 from [Cryptosporidium parvum]
Length = 987
Score = 96.7 bits (230), Expect = 1e-20
Identities = 55/159 (34%), Positives = 89/159 (55%), Gaps = 3/159 (1%)
Frame = +3
Query: 105 GMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETR---FTDTRKDEQDRC 275
G+M +RN++++ H+ HGK+ D LV + ++ A + +TDTR DEQ+R
Sbjct: 130 GLMSNPALVRNVALVGHLQHGKTVFMDMLVEQTHHMSTFNAKNEKHMKYTDTRVDEQERN 189
Query: 276 ITIKSTAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTD 455
I+IK+ +S+ E D R KS +L N++D+PGHV+FS E+TA+LR+ D
Sbjct: 190 ISIKAVPMSLVLE------------DSRSKS---YLCNIMDTPGHVNFSDEMTASLRLAD 234
Query: 456 GALXXXXXXXXXXXQTETVLRQAIAERIKPILFMNKMDR 572
GA+ TE +R AI + + ++ +NK+DR
Sbjct: 235 GAVLIVDAAEGVMVNTERAIRHAIQDHLPIVVVINKVDR 273
>At1g06220.1 68414.m00655 elongation factor Tu family protein
similar to Cryptosporidium parvum elongation factor-2
GB:U21667 GI:706974 from [Cryptosporidium parvum]
Length = 987
Score = 96.7 bits (230), Expect = 1e-20
Identities = 55/159 (34%), Positives = 89/159 (55%), Gaps = 3/159 (1%)
Frame = +3
Query: 105 GMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETR---FTDTRKDEQDRC 275
G+M +RN++++ H+ HGK+ D LV + ++ A + +TDTR DEQ+R
Sbjct: 130 GLMSNPALVRNVALVGHLQHGKTVFMDMLVEQTHHMSTFNAKNEKHMKYTDTRVDEQERN 189
Query: 276 ITIKSTAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTD 455
I+IK+ +S+ E D R KS +L N++D+PGHV+FS E+TA+LR+ D
Sbjct: 190 ISIKAVPMSLVLE------------DSRSKS---YLCNIMDTPGHVNFSDEMTASLRLAD 234
Query: 456 GALXXXXXXXXXXXQTETVLRQAIAERIKPILFMNKMDR 572
GA+ TE +R AI + + ++ +NK+DR
Sbjct: 235 GAVLIVDAAEGVMVNTERAIRHAIQDHLPIVVVINKVDR 273
>At5g25230.1 68418.m02991 elongation factor Tu family protein
translation Elongation Factor 2, Schizosaccharomyces
pombe, PIR:T39902
Length = 973
Score = 95.1 bits (226), Expect = 3e-20
Identities = 55/159 (34%), Positives = 89/159 (55%), Gaps = 3/159 (1%)
Frame = +3
Query: 105 GMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGET---RFTDTRKDEQDRC 275
G+M +RN++++ H+ HGK+ D LV + ++ A R+TDTR DEQ+R
Sbjct: 116 GLMSNPALVRNVALVGHLQHGKTVFMDMLVEQTHRMSTFNAENDKHMRYTDTRVDEQERN 175
Query: 276 ITIKSTAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTD 455
I+IK+ +S+ E D R KS +L N++D+PG+V+FS E+TA+LR+ D
Sbjct: 176 ISIKAVPMSLVLE------------DSRSKS---YLCNIMDTPGNVNFSDEMTASLRLAD 220
Query: 456 GALXXXXXXXXXXXQTETVLRQAIAERIKPILFMNKMDR 572
GA+ TE +R AI + + ++ +NK+DR
Sbjct: 221 GAVFIVDAAQGVMVNTERAIRHAIQDHLPIVVVINKVDR 259
>At5g39900.1 68418.m04839 GTP-binding protein LepA, putative
GTP-binding protein GUF1 - Saccharomyces cerevisiae,
PIR:S50374
Length = 661
Score = 89.0 bits (211), Expect = 2e-18
Identities = 54/148 (36%), Positives = 80/148 (54%)
Frame = +3
Query: 129 IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISMF 308
IRN S+IAH+DHGKSTL D L+ G I G+ ++ D K +++R IT+K+ +MF
Sbjct: 66 IRNFSIIAHIDHGKSTLADRLMELTGTIKKGH-GQPQYLD--KLQRERGITVKAQTATMF 122
Query: 309 FELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXX 488
+E + +D + G+L+NLID+PGHVDFS EV+ +L GAL
Sbjct: 123 YENKVED-----------QEASGYLLNLIDTPGHVDFSYEVSRSLSACQGALLVVDAAQG 171
Query: 489 XXXQTETVLRQAIAERIKPILFMNKMDR 572
QT A + + +NK+D+
Sbjct: 172 VQAQTVANFYLAFEANLTIVPVINKIDQ 199
>At5g13650.2 68418.m01585 elongation factor family protein contains
Pfam profiles: PF00009 elongation factor Tu GTP binding
domain,PF00679 elongation factor G C-terminus, PF03144
elongation factor Tu domain 2
Length = 676
Score = 85.4 bits (202), Expect = 3e-17
Identities = 52/169 (30%), Positives = 86/169 (50%)
Frame = +3
Query: 66 PSKMVNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFT 245
PS +V+ + +D++ N+RN++++AHVDHGK+TL DS++ +A + + + R
Sbjct: 62 PSTAEPASVEVKKKQLDRRDNVRNIAIVAHVDHGKTTLVDSMLRQAKVFRDNQVMQERIM 121
Query: 246 DTRKDEQDRCITIKSTAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSS 425
D+ E++R ITI S S+ + K +N+ID+PGH DF
Sbjct: 122 DSNDLERERGITILSKNTSITY--------------------KNTKVNIIDTPGHSDFGG 161
Query: 426 EVTAALRVTDGALXXXXXXXXXXXQTETVLRQAIAERIKPILFMNKMDR 572
EV L + DG L QT VL++A+ ++ +NK+DR
Sbjct: 162 EVERVLNMVDGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDR 210
>At5g08650.1 68418.m01029 GTP-binding protein LepA, putative
Length = 681
Score = 84.2 bits (199), Expect = 6e-17
Identities = 55/148 (37%), Positives = 76/148 (51%)
Frame = +3
Query: 126 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISM 305
NIRN S+IAH+DHGKSTL D L+ G + R + +F D E++R ITIK A M
Sbjct: 85 NIRNFSIIAHIDHGKSTLADKLLQVTGTVQN-RDMKEQFLDNMDLERERGITIKLQAARM 143
Query: 306 FFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXX 485
+ E+ F +NLID+PGHVDFS EV+ +L +GAL
Sbjct: 144 RYVYEDTP----------------FCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQ 187
Query: 486 XXXXQTETVLRQAIAERIKPILFMNKMD 569
QT + A+ ++ I +NK+D
Sbjct: 188 GVEAQTLANVYLALENNLEIIPVLNKID 215
>At5g13650.1 68418.m01584 elongation factor family protein contains
Pfam profiles: PF00009 elongation factor Tu GTP binding
domain,PF00679 elongation factor G C-terminus, PF03144
elongation factor Tu domain 2
Length = 675
Score = 83.4 bits (197), Expect = 1e-16
Identities = 49/154 (31%), Positives = 80/154 (51%)
Frame = +3
Query: 111 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKS 290
+D++ N+RN++++AHVDHGK+TL DS++ +A + + + R D+ E++R ITI S
Sbjct: 76 LDRRDNVRNIAIVAHVDHGKTTLVDSMLRQAKVFRDNQVMQERIMDSNDLERERGITILS 135
Query: 291 TAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXX 470
S+ + K +N+ID+PGH DF EV L + DG L
Sbjct: 136 KNTSITY--------------------KNTKVNIIDTPGHSDFGGEVERVLNMVDGVLLV 175
Query: 471 XXXXXXXXXQTETVLRQAIAERIKPILFMNKMDR 572
QT VL++A+ ++ +NK+DR
Sbjct: 176 VDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDR 209
>At1g62750.1 68414.m07082 elongation factor Tu family protein
similar to elongation factor G SP:P34811 [Glycine max
(Soybean)]
Length = 783
Score = 80.2 bits (189), Expect = 1e-15
Identities = 56/154 (36%), Positives = 79/154 (51%), Gaps = 4/154 (2%)
Frame = +3
Query: 123 RNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGE----TRFTDTRKDEQDRCITIKS 290
++ RN+ ++AH+D GK+T T+ ++ G + GE T D + EQ+R ITI S
Sbjct: 94 KDYRNIGIMAHIDAGKTTTTERILYYTG--RNYKIGEVHEGTATMDWMEQEQERGITITS 151
Query: 291 TAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXX 470
A + F++ IN+ID+PGHVDF+ EV ALRV DGA+
Sbjct: 152 AATTTFWDKHR--------------------INIIDTPGHVDFTLEVERALRVLDGAICL 191
Query: 471 XXXXXXXXXQTETVLRQAIAERIKPILFMNKMDR 572
Q+ETV RQA + I F+NKMDR
Sbjct: 192 FDSVAGVEPQSETVWRQADKYGVPRICFVNKMDR 225
>At2g45030.1 68415.m05606 mitochondrial elongation factor, putative
similar to SP|P25039 Elongation factor G 1,
mitochondrial precursor (mEF-G-1) {Saccharomyces
cerevisiae}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03764: Elongation factor
G domain IV, PF00679: Elongation factor G C-terminus
Length = 754
Score = 68.5 bits (160), Expect = 3e-12
Identities = 53/159 (33%), Positives = 78/159 (49%), Gaps = 5/159 (3%)
Frame = +3
Query: 111 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGII-----AGARAGETRFTDTRKDEQDRC 275
MDK +RN+ + AH+D GK+TLT+ ++ G I R G D+ E+++
Sbjct: 62 MDK---LRNIGISAHIDSGKTTLTERVLFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKG 118
Query: 276 ITIKSTAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTD 455
ITI+S A + K + +N+ID+PGHVDF+ EV ALRV D
Sbjct: 119 ITIQSAATYCTW--------------------KDYKVNIIDTPGHVDFTIEVERALRVLD 158
Query: 456 GALXXXXXXXXXXXQTETVLRQAIAERIKPILFMNKMDR 572
GA+ Q+ TV RQ + + F+NK+DR
Sbjct: 159 GAILVLCSVGGVQSQSITVDRQMRRYEVPRVAFINKLDR 197
>At1g45332.1 68414.m05195 mitochondrial elongation factor, putative
similar to mitochondrial elongation factor GI:3917 from
[Saccharomyces cerevisiae]
Length = 754
Score = 68.5 bits (160), Expect = 3e-12
Identities = 53/159 (33%), Positives = 78/159 (49%), Gaps = 5/159 (3%)
Frame = +3
Query: 111 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGII-----AGARAGETRFTDTRKDEQDRC 275
MDK +RN+ + AH+D GK+TLT+ ++ G I R G D+ E+++
Sbjct: 62 MDK---LRNIGISAHIDSGKTTLTERVLFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKG 118
Query: 276 ITIKSTAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTD 455
ITI+S A + K + +N+ID+PGHVDF+ EV ALRV D
Sbjct: 119 ITIQSAATYCTW--------------------KDYKVNIIDTPGHVDFTIEVERALRVLD 158
Query: 456 GALXXXXXXXXXXXQTETVLRQAIAERIKPILFMNKMDR 572
GA+ Q+ TV RQ + + F+NK+DR
Sbjct: 159 GAILVLCSVGGVQSQSITVDRQMRRYEVPRVAFINKLDR 197
>At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA)
identical to SWISS-PROT:P17745 elongation factor Tu,
chloroplast precursor (EF-Tu) [Arabidopsis thaliana]
Length = 476
Score = 53.2 bits (122), Expect = 1e-07
Identities = 44/165 (26%), Positives = 68/165 (41%), Gaps = 1/165 (0%)
Frame = +3
Query: 81 NFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKD 260
+FTV RG ++K+ N+ I HVDHGK+TLT +L I + A + D +
Sbjct: 63 SFTVRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALASIGSSVAKKYDEIDAAPE 122
Query: 261 EQDRCITIKSTAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAA 440
E+ R ITI + + +E E + +D PGH D+ +
Sbjct: 123 ERARGITINTATVE--YETENRHYAH------------------VDCPGHADYVKNMITG 162
Query: 441 LRVTDGALXXXXXXXXXXXQT-ETVLRQAIAERIKPILFMNKMDR 572
DGA+ QT E +L ++F+NK D+
Sbjct: 163 AAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPDMVVFLNKEDQ 207
>At5g10630.1 68418.m01231 elongation factor 1-alpha, putative /
EF-1-alpha, putative contains similarity to
SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha)
[Aeropyrum pernix]
Length = 667
Score = 37.1 bits (82), Expect = 0.010
Identities = 28/110 (25%), Positives = 49/110 (44%)
Frame = +3
Query: 135 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISMFFE 314
N++++ HVD GKSTL+ L+ G R + + K+ + + + A ++
Sbjct: 241 NLAIVGHVDSGKSTLSGRLLHLLG-----RISQKQMHKYEKEAKLQGKGSFAYAWALDES 295
Query: 315 LEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGAL 464
EE++ + K + L+DSPGH DF + A D A+
Sbjct: 296 AEERERGITMTVAVAYFNSKRHHVVLLDSPGHKDFVPNMIAGATQADAAI 345
>At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha
identical to SWISS-PROT:P13905 elongation factor 1-alpha
(EF-1-alpha) [Arabidopsis thaliana]
Length = 449
Score = 35.5 bits (78), Expect = 0.030
Identities = 35/118 (29%), Positives = 53/118 (44%)
Frame = +3
Query: 111 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKS 290
M K++ N+ VI HVD GKST T L+ K G I R E RF + R + K
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGI-DKRVIE-RFEKEAAEMNKR--SFKY 56
Query: 291 TAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGAL 464
+ + E + + I + ++ K + +ID+PGH DF + D A+
Sbjct: 57 AWVLDKLKAERERGITIDIALWKFETTK-YYCTVIDAPGHRDFIKNMITGTSQADCAV 113
>At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,
putative similar to mitochondrial elongation factor Tu
[Arabidopsis thaliana] gi|1149571|emb|CAA61511
Length = 454
Score = 35.5 bits (78), Expect = 0.030
Identities = 34/146 (23%), Positives = 57/146 (39%), Gaps = 1/146 (0%)
Frame = +3
Query: 135 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISMFFE 314
N+ I HVDHGK+TLT ++ A+A D +E+ R ITI + + +E
Sbjct: 69 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVE--YE 126
Query: 315 LEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXX 494
++ +D PGH D+ + DG +
Sbjct: 127 TAKRHYAH------------------VDCPGHADYVKNMITGAAQMDGGILVVSGPDGPM 168
Query: 495 XQTETVLRQAIAERIKPIL-FMNKMD 569
QT+ + A + ++ F+NK+D
Sbjct: 169 PQTKEHILLARQVGVPSLVCFLNKVD 194
>At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 35.5 bits (78), Expect = 0.030
Identities = 35/118 (29%), Positives = 53/118 (44%)
Frame = +3
Query: 111 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKS 290
M K++ N+ VI HVD GKST T L+ K G I R E RF + R + K
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGI-DKRVIE-RFEKEAAEMNKR--SFKY 56
Query: 291 TAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGAL 464
+ + E + + I + ++ K + +ID+PGH DF + D A+
Sbjct: 57 AWVLDKLKAERERGITIDIALWKFETTK-YYCTVIDAPGHRDFIKNMITGTSQADCAV 113
>At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 35.5 bits (78), Expect = 0.030
Identities = 35/118 (29%), Positives = 53/118 (44%)
Frame = +3
Query: 111 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKS 290
M K++ N+ VI HVD GKST T L+ K G I R E RF + R + K
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGI-DKRVIE-RFEKEAAEMNKR--SFKY 56
Query: 291 TAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGAL 464
+ + E + + I + ++ K + +ID+PGH DF + D A+
Sbjct: 57 AWVLDKLKAERERGITIDIALWKFETTK-YYCTVIDAPGHRDFIKNMITGTSQADCAV 113
>At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 35.5 bits (78), Expect = 0.030
Identities = 35/118 (29%), Positives = 53/118 (44%)
Frame = +3
Query: 111 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKS 290
M K++ N+ VI HVD GKST T L+ K G I R E RF + R + K
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGI-DKRVIE-RFEKEAAEMNKR--SFKY 56
Query: 291 TAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGAL 464
+ + E + + I + ++ K + +ID+PGH DF + D A+
Sbjct: 57 AWVLDKLKAERERGITIDIALWKFETTK-YYCTVIDAPGHRDFIKNMITGTSQADCAV 113
>At1g17220.1 68414.m02098 translation initiation factor IF-2,
chloroplast, putative similar to SP|P57997|IF2C_PHAVU
Translation initiation factor IF-2, chloroplast
precursor (PvIF2cp) {Phaseolus vulgaris}
Length = 1026
Score = 33.5 bits (73), Expect = 0.12
Identities = 17/60 (28%), Positives = 28/60 (46%)
Frame = +3
Query: 393 IDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAIAERIKPILFMNKMDR 572
+D+PGH F + RVTD A+ QT + A A + ++ +NK+D+
Sbjct: 557 LDTPGHEAFGAMRARGARVTDIAIIVVAADDGIRPQTNEAIAHAKAAAVPIVIAINKIDK 616
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +3
Query: 138 MSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETR 239
++++ HVDHGK+TL D + K+ + A G T+
Sbjct: 504 ITIMGHVDHGKTTLLD-YIRKSKVAASEAGGITQ 536
>At4g11160.1 68417.m01808 translation initiation factor IF-2,
mitochondrial, putative similar to SP|P46198|IF2M_BOVIN
Translation initiation factor IF-2, mitochondrial
precursor (IF-2Mt) (IF-2(Mt)) {Bos taurus}
Length = 743
Score = 31.5 bits (68), Expect = 0.48
Identities = 17/68 (25%), Positives = 28/68 (41%)
Frame = +3
Query: 369 EKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAIAERIKPI 548
+ G I +D+PGH FS VTD + QT + A + + +
Sbjct: 265 DSGTSITFLDTPGHAAFSEMRARGAAVTDIVVLVVAADDGVMPQTLEAIAHARSANVPVV 324
Query: 549 LFMNKMDR 572
+ +NK D+
Sbjct: 325 VAINKCDK 332
Score = 28.7 bits (61), Expect = 3.4
Identities = 13/31 (41%), Positives = 22/31 (70%)
Frame = +3
Query: 138 MSVIAHVDHGKSTLTDSLVSKAGIIAGARAG 230
++V+ HVDHGK++L D+L + + +A AG
Sbjct: 222 VTVMGHVDHGKTSLLDALRNTS--VAAREAG 250
>At3g20280.2 68416.m02570 PHD finger family protein contains Pfam
profile: PF00628 PHD-finger
Length = 482
Score = 30.7 bits (66), Expect = 0.84
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = -3
Query: 511 TVSVCTHTPDTQSTTTRAPSVTRSAAVTSEEKS 413
T S T PD ST T APSVT+ + + EK+
Sbjct: 383 TASPATVVPDQDSTITAAPSVTQEDSAFNTEKT 415
>At3g20280.1 68416.m02569 PHD finger family protein contains Pfam
profile: PF00628 PHD-finger
Length = 743
Score = 30.7 bits (66), Expect = 0.84
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = -3
Query: 511 TVSVCTHTPDTQSTTTRAPSVTRSAAVTSEEKS 413
T S T PD ST T APSVT+ + + EK+
Sbjct: 644 TASPATVVPDQDSTITAAPSVTQEDSAFNTEKT 676
>At2g31060.1 68415.m03790 elongation factor family protein contains
Pfam profiles: PF00009 elongation factor Tu GTP binding
domain, PF00679 elongation factor G C-terminus, PF03144
elongation factor Tu domain 2
Length = 527
Score = 30.7 bits (66), Expect = 0.84
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +3
Query: 447 VTDGALXXXXXXXXXXXQTETVLRQAIAERIKPILFMNKMDR 572
+ +GA+ QT+ VL +A+ ++PIL +NK+DR
Sbjct: 1 MVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDR 42
>At5g17810.1 68418.m02088 homeobox-leucine zipper transcription
factor family protein similar to to PRESSED FLOWER
(GP:17907768) {Arabidopsis thaliana};
Length = 268
Score = 29.9 bits (64), Expect = 1.5
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +1
Query: 148 SPTSITASQPSRTRWFPRPVSLLVRE 225
SP+S T+++P R RW P+P +L+ E
Sbjct: 9 SPSS-TSTEPVRARWSPKPEQILILE 33
>At1g04220.1 68414.m00412 beta-ketoacyl-CoA synthase, putative
Strong similarity to beta-keto-Coa synthase gb|U37088
from Simmondsia chinensis, GI:4091810
Length = 528
Score = 29.9 bits (64), Expect = 1.5
Identities = 17/41 (41%), Positives = 21/41 (51%)
Frame = -2
Query: 533 LGNSLTQYCFSLYTHTRHTVNNHKGSISDTECSCYFRREIN 411
L N + C S Y HTV HKGS D +C ++RE N
Sbjct: 299 LSNRSSDRCRSKY-QLIHTVRTHKGS-DDNAFNCVYQREDN 337
>At1g32120.1 68414.m03952 expressed protein contains Pfam profile
PF04819: Family of unknown function (DUF716) (Plant
viral-response family)
Length = 1206
Score = 29.5 bits (63), Expect = 1.9
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +1
Query: 166 ASQPSRTRWFPRPVSLLVREPERPVSLTRVR-TNKTVASPLNLRPSLCSSSLKRK 327
A Q S + W PR S + P++ + T+ V+ N PS+ S LKRK
Sbjct: 695 AKQSSSSPWVPRHTSSVAHPPKQENYIKHHNSTSSRVSKESNRTPSVSSYPLKRK 749
>At1g21160.1 68414.m02646 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to
SP|O60841 Translation initiation factor IF-2 {Homo
sapiens}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03144: Elongation factor
Tu domain 2
Length = 1088
Score = 29.5 bits (63), Expect = 1.9
Identities = 18/63 (28%), Positives = 29/63 (46%)
Frame = +3
Query: 384 INLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAIAERIKPILFMNK 563
I +ID+PGH F++ + + D A+ QT L +K I+ +NK
Sbjct: 558 ILVIDTPGHESFTNLRSRGSNLCDLAILVVDIMRGLEPQTIESLNLLRRRNVKFIIALNK 617
Query: 564 MDR 572
+DR
Sbjct: 618 VDR 620
>At3g03660.1 68416.m00369 homeobox-leucine zipper transcription
factor family protein similar to to PRESSED FLOWER
(GP:17907768) {Arabidopsis thaliana}
Length = 199
Score = 29.1 bits (62), Expect = 2.6
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +1
Query: 148 SPTSITASQPSRTRWFPRPVSLLVRE 225
S + T+++P R+RW P+P +L+ E
Sbjct: 20 SASGSTSAEPVRSRWSPKPEQILILE 45
>At3g24390.1 68416.m03063 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At3g24380, At5g36840,
At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
At2g05560, At4g08880, At1g34730, At1g27790, At1g34740,
At1g27780, At5g36850, At3g42730, At1g52020, At4g05280,
At1g25886, At4g03300
Length = 1139
Score = 28.3 bits (60), Expect = 4.5
Identities = 25/119 (21%), Positives = 50/119 (42%), Gaps = 2/119 (1%)
Frame = +3
Query: 75 MVNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTR 254
M +F D+IR +D K ++ +H D + ++ R T TR
Sbjct: 484 MKDFVRDQIRAALDPKGKRPEQTIPSH-DSREPPISMDKAPVTAKKPSRRMSTKGSTGTR 542
Query: 255 KDEQDRCIT--IKSTAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSS 425
K + ++ + + A+S+ +E+DL PD ++ +GF+ + DF++
Sbjct: 543 KSSRLTRVSHDVDTPALSVGCNSKEEDLDVPGEPDSNKEDMQGFIDEHDGANNESDFTA 601
>At3g28790.1 68416.m03593 expressed protein
Length = 608
Score = 27.5 bits (58), Expect = 7.8
Identities = 25/68 (36%), Positives = 32/68 (47%)
Frame = -3
Query: 514 STVSVCTHTPDTQSTTTRAPSVTRSAAVTSEEKSTCPGESIKLIKKPFSLFSRWSGFVMN 335
ST + T TP T + +T APS T +A TSE+ S + K S S SG V
Sbjct: 294 STPTPSTPTPSTPTPSTPAPS-TPAAGKTSEKGSESASMKKESNSKSES-ESAASGSVSK 351
Query: 334 TKSFSSSS 311
TK + S
Sbjct: 352 TKETNKGS 359
>At3g08670.1 68416.m01007 expressed protein
Length = 567
Score = 27.5 bits (58), Expect = 7.8
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Frame = +1
Query: 148 SPTSITASQPSRTRWFPRPVSLLVREPE--RPVSLTRVRTNKTVASPLNLRPSLCSSSL- 318
SP+SI + + + RP S R RP + TR + ++P +RP SSS+
Sbjct: 175 SPSSILNTSSASVSSYIRPSSPSSRSSSSARPSTPTRTSSASRSSTPSRIRPGSSSSSMD 234
Query: 319 KRKI*YSSQTLTSVKR 366
K + SS+ T R
Sbjct: 235 KARPSLSSRPSTPTSR 250
>At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,
putative similar to EF-1-alpha-related GTP-binding
protein gi|1009232|gb|AAA79032
Length = 532
Score = 27.5 bits (58), Expect = 7.8
Identities = 23/102 (22%), Positives = 44/102 (43%)
Frame = +3
Query: 114 DKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKST 293
+KKR++ N+ I HVD GKST+ ++ +G + + + K+ +D+
Sbjct: 97 NKKRHL-NVVFIGHVDAGKSTIGGQILFLSG-----QVDDRQIQKYEKEAKDKSRESWYM 150
Query: 294 AISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDF 419
A M EE+ + + ++D+PGH +
Sbjct: 151 AYIMDTNEEERLKGKTVEVGRAHFETESTRFTILDAPGHKSY 192
>At1g12080.2 68414.m01397 expressed protein
Length = 138
Score = 27.5 bits (58), Expect = 7.8
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -3
Query: 502 VCTHTPDTQSTTTRAPSVTRSAAVTSEEKST 410
V T TP + +A VT + AV EEK T
Sbjct: 85 VITETPVVEEEEKKAEEVTETPAVVEEEKKT 115
>At1g12080.1 68414.m01396 expressed protein
Length = 104
Score = 27.5 bits (58), Expect = 7.8
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -3
Query: 502 VCTHTPDTQSTTTRAPSVTRSAAVTSEEKST 410
V T TP + +A VT + AV EEK T
Sbjct: 51 VITETPVVEEEEKKAEEVTETPAVVEEEKKT 81
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,487,478
Number of Sequences: 28952
Number of extensions: 275070
Number of successful extensions: 963
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 953
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1295224128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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