Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10m19f
(649 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb... 31 0.14
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 29 0.44
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 0.76
SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ... 27 1.8
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 27 2.3
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc... 27 3.1
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 26 4.1
SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr 2... 26 4.1
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 4.1
SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr... 26 4.1
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos... 26 5.4
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 26 5.4
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 26 5.4
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb... 25 7.1
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 25 7.1
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual 25 7.1
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 25 7.1
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc... 25 9.4
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po... 25 9.4
SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|... 25 9.4
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 25 9.4
>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 31.1 bits (67), Expect = 0.14
Identities = 16/80 (20%), Positives = 35/80 (43%)
Frame = -1
Query: 640 IQTGNPVGSATSLSSSVTDNVRAQAEANQVDSTPIAASVVDEPDQKVAKELSDTGNSIDG 461
I + S +S +++ + + + ++ STPI++S+ + +S + S G
Sbjct: 133 IYSSTSASSTSSSTATPSSSSTTSSSSSSSSSTPISSSITSSISSSASSSVSSSSASSSG 192
Query: 460 SVV*TVGKTTPVHNNNVAVG 401
S+ KT +N+ G
Sbjct: 193 SISSADAKTVSASSNSTISG 212
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 29.5 bits (63), Expect = 0.44
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -2
Query: 615 LPPACRPALPTTCAPKLKPIKWTRPQLPPP 526
L P+ P LP + +L P+ TRPQ+P P
Sbjct: 1046 LSPSVTPQLPPVSS-RLPPVSATRPQIPQP 1074
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 28.7 bits (61), Expect = 0.76
Identities = 22/80 (27%), Positives = 31/80 (38%), Gaps = 1/80 (1%)
Frame = -2
Query: 615 LPPACRPALPTTCAPKLKPIKWTRPQLPPPLLMSQTKKLPRNCPTL-GTPLTAVLYRPLA 439
LPP+ P+LP + P L P LPP ++ LP P P A P
Sbjct: 423 LPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIA--PPLPAGMPAAPPLPPAAPAPPPAP 480
Query: 438 RPRQSTTITLQSETASKAGR 379
P + + +E + GR
Sbjct: 481 APAPAAPVASIAELPQQDGR 500
Score = 28.3 bits (60), Expect = 1.0
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Frame = -2
Query: 612 PPACRPALPTTCAPKLKPI----KWTRPQL--PPPLLMSQTKKLPRNCPTLGTPLTAVLY 451
PPA PA+P AP L P+ + + P + PP L S LP + P P+ A
Sbjct: 388 PPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPP-SLPMGAPAA 446
Query: 450 RPL 442
PL
Sbjct: 447 PPL 449
>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 27.5 bits (58), Expect = 1.8
Identities = 29/113 (25%), Positives = 50/113 (44%), Gaps = 2/113 (1%)
Frame = -1
Query: 616 SATSLSSSVTDNVRAQAEANQVDSTPIAASVVDEPDQKVAKELSDTGNSIDGSVV*TVGK 437
S TS+SSS ++N + +VDS P + V D K KE S+ G S T+
Sbjct: 368 STTSISSSPSENSDTSDDLTKVDS-PNKSLVNDNVSAKHDKE-SENGKSKFPPPSQTLVT 425
Query: 436 TTPVH--NNNVAVGDGQQGGADHGVHSGVSVAVPAVDNNKERQVSIVVRVPDR 284
T+ + N + G + +D S SV + + +++ S+ + +R
Sbjct: 426 TSTISAAGNEPSDEIGSENDSDSDSDSDSSVPLSQLQKKSQQRNSVSHEIQNR 478
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 27.1 bits (57), Expect = 2.3
Identities = 16/63 (25%), Positives = 29/63 (46%)
Frame = +3
Query: 405 TATLLLWTGVVLPTVYTTLPSMEFPVSDSSLATFWSGSSTTEAAIGVEST*LASAWARTL 584
+AT WT + T+ + + SS A+ WS SS + + +T +++ T
Sbjct: 922 SATSSSWTAETSSSAITSSVAASVTPTSSSSASSWSSSSEVDPSTAASATGSSTSSIATA 981
Query: 585 SVT 593
SV+
Sbjct: 982 SVS 984
>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 26.6 bits (56), Expect = 3.1
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = -1
Query: 340 AVDNNKERQVSIVVRVPDRVDIAICNNLMVVLVTSG 233
A+ + E +++VVRV R D + +N + + TSG
Sbjct: 64 ALHDENETNINVVVRVRGRTDQEVRDNSSLAVSTSG 99
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 26.2 bits (55), Expect = 4.1
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = +3
Query: 435 VLPTVYTTLPSMEFPVSDSSLATFWSGSSTTEAAIGVEST 554
VLPT T S VS SSL++F ST G +T
Sbjct: 244 VLPTSIITSTSTPVTVSSSSLSSFTPSYSTNLTTTGSTTT 283
>SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 426
Score = 26.2 bits (55), Expect = 4.1
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -3
Query: 128 SKRIGLHLPHSDCCLQGSW 72
S + LPHSD L GSW
Sbjct: 290 SNSVSAKLPHSDSVLTGSW 308
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.2 bits (55), Expect = 4.1
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = -2
Query: 648 PAGSKPVTLLGLPPACRPALPTTCAPKLKPIKWTRPQLPP 529
P+ + P+ LPP +PA P P + P +PP
Sbjct: 161 PSKAPPIPS-SLPPPAQPAAPVKSPPSAPSLPSAVPPMPP 199
>SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 527
Score = 26.2 bits (55), Expect = 4.1
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = +2
Query: 224 WLFTRRNQNNHQVITNGNVNS--IRNSNYNGNLPLFVIVHGWNSNGNSAVNTMIRPALLA 397
W+FT ++N QV NG + S +N + PL +G S+G+ + + LL
Sbjct: 425 WVFTSDDRNLAQVWVNGRLVSGFEMKANLKNSTPL---TNGVTSSGHQVFKELTQAHLLP 481
Query: 398 VSDC 409
+ C
Sbjct: 482 RTQC 485
>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 25.8 bits (54), Expect = 5.4
Identities = 18/60 (30%), Positives = 24/60 (40%)
Frame = -2
Query: 639 SKPVTLLGLPPACRPALPTTCAPKLKPIKWTRPQLPPPLLMSQTKKLPRNCPTLGTPLTA 460
S PV LL P+LP PK+K + P S + P +G+P TA
Sbjct: 321 SSPVPLLAKKREGSPSLPIPILPKMKDTSIPAAE-PASSTTSARDQTPSTPKDVGSPSTA 379
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 25.8 bits (54), Expect = 5.4
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = -2
Query: 648 PAGSKPVTLLGLPPACRPALPTTCAPKLK-PIKWTRPQLPPP 526
P S P +++ PP+ +P P+ AP P + P PPP
Sbjct: 156 PTVSAPNSMVSPPPSFQP--PSAAAPATSLPSDYNPPPPPPP 195
Score = 25.8 bits (54), Expect = 5.4
Identities = 25/78 (32%), Positives = 31/78 (39%), Gaps = 6/78 (7%)
Frame = -2
Query: 606 ACRPALPTTCAPKLKPIKWTRPQLPPPLLMSQ---TKKLP---RNCPTLGTPLTAVLYRP 445
A P +P T PK P PPP L Q T +LP RN LG+ + + P
Sbjct: 218 AVSPEIPPTYTPKQADPLPAPPPPPPPTLPPQSTNTSQLPMPSRNVNNLGSQVN--IPPP 275
Query: 444 LARPRQSTTITLQSETAS 391
A P Q + T S
Sbjct: 276 PATPSQPPRPPTNASTRS 293
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 25.8 bits (54), Expect = 5.4
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 92 SHYVEGVSRYVWMPDGEGVPHLVDLEEPAEEDILMSR 202
S Y +G+S V + G+GV H+V + E + L+ R
Sbjct: 141 SLYAQGLSSGVVVDSGDGVTHIVPVYESVVLNHLVGR 177
>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1334
Score = 25.4 bits (53), Expect = 7.1
Identities = 14/52 (26%), Positives = 21/52 (40%)
Frame = -2
Query: 624 LLGLPPACRPALPTTCAPKLKPIKWTRPQLPPPLLMSQTKKLPRNCPTLGTP 469
+ G P PA + ++P ++ LPPP K LP +L P
Sbjct: 21 IFGAPRKREPARTVSTPAFMEPAPVSKKPLPPPTRRLPRKPLPFRSTSLQPP 72
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 25.4 bits (53), Expect = 7.1
Identities = 38/154 (24%), Positives = 54/154 (35%), Gaps = 5/154 (3%)
Frame = +2
Query: 167 EEPAEEDILMSRNGANNQYWLFTRRNQNNHQVITNG--NVNSIRNSNYNGNLPLFVIV-- 334
E P E L GA + N N TN N N+ N+N N
Sbjct: 40 EPPVENLKLAPPPGATSVNTAVYNNNNNTSAANTNAAYNANTAANANANTATTTNAAATT 99
Query: 335 -HGWNSNGNSAVNTMIRPALLAVSDCNVIVVDWRGLANGLYNTAVNGVPSVGQFLGNFLV 511
+N N + N P A + N D +GL +GL T+ NG + + V
Sbjct: 100 SAAYNPNAPANTNAAYYPNAAATTTTNADGSD-KGLFSGL--TSSNGYTTGNSYSRPSYV 156
Query: 512 WLINNGGGNWGRVHLIGFSLGAHVVGNAGRQAGG 613
+ G G L +LG ++ + G GG
Sbjct: 157 APVAAGLGGLALGGLASHALG-NLFHHRGHNGGG 189
>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 978
Score = 25.4 bits (53), Expect = 7.1
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +2
Query: 281 NSIRNSNYNGNLPLFVIVHGWNSNGN 358
+SIRNS++N L LF V S+GN
Sbjct: 604 SSIRNSDFNSQLYLFETVGVLISSGN 629
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 25.4 bits (53), Expect = 7.1
Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 4/61 (6%)
Frame = -2
Query: 615 LPPACRPALPTTCAPKLKPIKWTRPQLPP----PLLMSQTKKLPRNCPTLGTPLTAVLYR 448
LPP PA P + P +PP PL+ + T P + P + P TA +
Sbjct: 210 LPPGFSPATPAPTSAANTPATIAATSIPPVPNVPLVGATTAVPPLSIPNV-LPFTAAQHF 268
Query: 447 P 445
P
Sbjct: 269 P 269
>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
Shk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 658
Score = 25.0 bits (52), Expect = 9.4
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Frame = +1
Query: 190 PYVKERCKQPIL---AFHQT*PKQPSSYYKWQCQLYPELELQWKPASLCYCPRLEQQ 351
P+ +E ++P+L A + QP+S +LYP PAS P L Q
Sbjct: 217 PFPRESTEKPLLSVSALSSSSHLQPTSATSSSSRLYPSRPAPTPPASSSSSPLLSSQ 273
>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 507
Score = 25.0 bits (52), Expect = 9.4
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = -1
Query: 622 VGSATSLSSSVTDNVRAQAEANQVDSTPIAASVVDEPD-QKVAKELSDTGNSIDGSV 455
+ S SLSS+ TDN+ A V T +AASV D + +S +S SV
Sbjct: 166 LSSLASLSSASTDNLAA-----SVTPTTVAASVASSVDTDSASATISSVVDSATSSV 217
>SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|chr
3|||Manual
Length = 542
Score = 25.0 bits (52), Expect = 9.4
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = +2
Query: 152 HLVDLEEPAEEDILMSRNGANN 217
+LVD++EPAEE I + ++ N+
Sbjct: 52 NLVDVQEPAEETIPLEQDKEND 73
>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 2386
Score = 25.0 bits (52), Expect = 9.4
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +1
Query: 244 PKQPSSYYKWQCQLYPELELQWKPASLCYCPRL 342
PK P +Y+W + +PE W + YC L
Sbjct: 2185 PKFPPVFYEWFVESFPEPN-NWVTSRQNYCRTL 2216
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,889,807
Number of Sequences: 5004
Number of extensions: 63462
Number of successful extensions: 258
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 258
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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