Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10m18r
         (399 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    28   0.46 
SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual        26   2.5  
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual     25   3.3  
SPAC6G9.05 |pcd1||coenzyme A diphosphatase |Schizosaccharomyces ...    25   4.3  
SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar...    25   5.7  
SPAC9.06c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual          24   7.6  
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c...    24   7.6  
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    24   10.0 
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    24   10.0 
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch...    24   10.0 
SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo...    24   10.0 
SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces p...    24   10.0 

>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 28.3 bits (60), Expect = 0.46
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = +2

Query: 239 ILQHRRPRLPLMQLEAPCSFNFCSLRA 319
           I Q     LP + L +PCSF  CSLRA
Sbjct: 48  IAQKSNISLPFLTL-SPCSFTICSLRA 73


>SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
 Frame = -1

Query: 237 WHW-GSVDSISGSRARFQLSGNSGRKHSRCCTSILRK 130
           W W GSVD  SG         N  R  S   TS+LR+
Sbjct: 39  WKWYGSVDEDSGYVYLTSKDSNEARSGSLWSTSVLRQ 75


>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 653

 Score = 25.4 bits (53), Expect = 3.3
 Identities = 12/46 (26%), Positives = 26/46 (56%)
 Frame = +2

Query: 152 QRLCFLPLFPLS*NRAREPLMESTDPQCHILQHRRPRLPLMQLEAP 289
           +++ FL L PLS    ++  +  ++P+   +QH++  L  ++L  P
Sbjct: 135 RKMQFLSLEPLSLLLLKDSFINKSNPEYESMQHQQILLKKLKLHFP 180


>SPAC6G9.05 |pcd1||coenzyme A diphosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 285

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +2

Query: 212 MESTDPQCHILQHRRPRLPLMQLEAPCSF 298
           M+S   Q ++L   RP LPL     P  F
Sbjct: 88  MDSLSHQIYLLHKNRPTLPLKPTNQPTRF 116


>SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 507

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = -1

Query: 306 QKLKEHGASSCISGKRGRRCCNIWHWGS 223
           Q   E  A +C  G  G  C  +W+W +
Sbjct: 394 QSSAEAAALACSGGSDGVTCGYMWYWNN 421


>SPAC9.06c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 192

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 6/19 (31%), Positives = 11/19 (57%)
 Frame = +2

Query: 59  HHLMAWGLPWQQQSTVTQC 115
           H ++ WG  W++  T  +C
Sbjct: 160 HGVIGWGATWEKSKTQMEC 178


>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 19/66 (28%), Positives = 26/66 (39%)
 Frame = -2

Query: 230 GGLLTPLVAPVLXXXXXXXXXXXXXXXXXAYYGNLVAGSIVSQLTAAAMVAPTP*GDAKH 51
           G L+TP V PV+                    G    GSI++Q + A  V P P   +K 
Sbjct: 630 GALVTPSVPPVIATVSKTNTTNTGVQQRGNV-GVTTTGSILTQSSPALPVQPVPLAYSKP 688

Query: 50  HPFSTS 33
            P + S
Sbjct: 689 APTTKS 694


>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 676

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +2

Query: 233 CHILQHRRPRLPLMQLEAPCSFNFCSLRAI 322
           CH L HR+  L  M+  + C    C L A+
Sbjct: 647 CHHLYHRQCLLQWMETRSICPVCRCHLPAV 676


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1888

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -3

Query: 346 NIVAFIPAYRSKRTKIK 296
           N V+ IP YR+ +TK+K
Sbjct: 406 NAVSTIPVYRTTKTKMK 422


>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 216

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 8/30 (26%), Positives = 13/30 (43%)
 Frame = -1

Query: 258 GRRCCNIWHWGSVDSISGSRARFQLSGNSG 169
           G  C N+W     + + G R  + + G  G
Sbjct: 56  GEICFNVWDTAGQEKLGGLRDGYYIQGQCG 85


>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
           Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 739

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +2

Query: 203 EPLMESTDPQCHILQHRRPRLPLMQL-EAPCSF 298
           +P   +TD Q ++ +H  PRLP   + + P SF
Sbjct: 506 DPDPSNTDTQWNVEEHINPRLPEGSINDYPSSF 538


>SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = -1

Query: 258 GRRCCNIWHWGSVDSISGSRARFQLSGNSGRKHSR 154
           G R C    W S+D +S S A  Q  G      +R
Sbjct: 287 GGRYCETVGWLSIDGLSASNATRQYVGRPVTNETR 321


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,499,572
Number of Sequences: 5004
Number of extensions: 25633
Number of successful extensions: 54
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)