Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10m17r
(410 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin relat... 32 0.19
AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical... 31 0.25
AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical ... 31 0.25
AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical... 31 0.43
Z81579-5|CAB04654.3| 1305|Caenorhabditis elegans Hypothetical pr... 27 4.0
AY959881-1|AAX56914.1| 1305|Caenorhabditis elegans nephrocystin-... 27 4.0
Z68298-1|CAA92598.2| 342|Caenorhabditis elegans Hypothetical pr... 26 9.2
AF040641-1|AAB94947.2| 203|Caenorhabditis elegans Calponin prot... 26 9.2
>AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin related.
see also lmb-protein 1 protein.
Length = 1067
Score = 31.9 bits (69), Expect = 0.19
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = -1
Query: 290 SCISGKRGRRC--CNIWHWGSVDSISGSRARFQLSGN 186
+C SG +G RC C HWGS + G+ R +GN
Sbjct: 973 NCKSGYQGERCGECAQNHWGSPREVGGTCERCDCNGN 1009
>AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical
protein Y64G10A.7 protein.
Length = 1651
Score = 31.5 bits (68), Expect = 0.25
Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
Frame = -1
Query: 305 EHGASSCISGKRGRRC---CNIWHWGSVDSISGSRARFQLSGNSGRKHSRCCTSILRKFS 135
EH SC+SG G +C C + D ISG S G + +C L+ +
Sbjct: 1195 EHCEKSCVSGHYGAKCEETCECENGALCDPISG-----HCSCQPGWRGKKCNRPCLKGYF 1249
Query: 134 GRQHCVTVDCCCHGS 90
GR HC + C C S
Sbjct: 1250 GR-HC-SQSCRCANS 1262
Score = 27.9 bits (59), Expect = 3.0
Identities = 19/63 (30%), Positives = 26/63 (41%)
Frame = -1
Query: 308 KEHGASSCISGKRGRRCCNIWHWGSVDSISGSRARFQLSGNSGRKHSRCCTSILRKFSGR 129
KE+G CI G G C + +G R + + RK RC L +SG
Sbjct: 1138 KENGDCECIDGWTGPSCEFLCPFGQFGRNCAQRCNCKNGASCDRKTGRC--ECLPGWSG- 1194
Query: 128 QHC 120
+HC
Sbjct: 1195 EHC 1197
>AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical
protein Y64G10A.7 protein.
Length = 1651
Score = 31.5 bits (68), Expect = 0.25
Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
Frame = -1
Query: 305 EHGASSCISGKRGRRC---CNIWHWGSVDSISGSRARFQLSGNSGRKHSRCCTSILRKFS 135
EH SC+SG G +C C + D ISG S G + +C L+ +
Sbjct: 1195 EHCEKSCVSGHYGAKCEETCECENGALCDPISG-----HCSCQPGWRGKKCNRPCLKGYF 1249
Query: 134 GRQHCVTVDCCCHGS 90
GR HC + C C S
Sbjct: 1250 GR-HC-SQSCRCANS 1262
Score = 27.9 bits (59), Expect = 3.0
Identities = 19/63 (30%), Positives = 26/63 (41%)
Frame = -1
Query: 308 KEHGASSCISGKRGRRCCNIWHWGSVDSISGSRARFQLSGNSGRKHSRCCTSILRKFSGR 129
KE+G CI G G C + +G R + + RK RC L +SG
Sbjct: 1138 KENGDCECIDGWTGPSCEFLCPFGQFGRNCAQRCNCKNGASCDRKTGRC--ECLPGWSG- 1194
Query: 128 QHC 120
+HC
Sbjct: 1195 EHC 1197
>AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical
protein Y45F10B.10 protein.
Length = 1592
Score = 30.7 bits (66), Expect = 0.43
Identities = 19/51 (37%), Positives = 25/51 (49%)
Frame = +2
Query: 92 YHGSSSQL*HNAAGH*ISVVCLCSSGCASCRYSR*AETEHGSH*WSQQTPS 244
YH +S QL GH +V CLCSS +S S + +SQ TP+
Sbjct: 896 YHIASEQLIGTFKGHTAAVTCLCSSNDSSLFVSTSFDKTVNVWVFSQSTPT 946
>Z81579-5|CAB04654.3| 1305|Caenorhabditis elegans Hypothetical
protein R13H4.1 protein.
Length = 1305
Score = 27.5 bits (58), Expect = 4.0
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = +3
Query: 6 FNSNKTEKVRSWSDVENG 59
FN N +K+R W+D++ G
Sbjct: 828 FNENSLDKIRQWNDLKEG 845
>AY959881-1|AAX56914.1| 1305|Caenorhabditis elegans
nephrocystin-4-like protein protein.
Length = 1305
Score = 27.5 bits (58), Expect = 4.0
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = +3
Query: 6 FNSNKTEKVRSWSDVENG 59
FN N +K+R W+D++ G
Sbjct: 828 FNENSLDKIRQWNDLKEG 845
>Z68298-1|CAA92598.2| 342|Caenorhabditis elegans Hypothetical
protein F44D12.2 protein.
Length = 342
Score = 26.2 bits (55), Expect = 9.2
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1
Query: 241 QCHILQHRRPRLPLMQLEAPCSFNFCSLRAIRR 339
+CH+ + PRLP ++ + C FC + A R
Sbjct: 214 ECHV-DYFNPRLPYVKSGSSCIGQFCFISATSR 245
>AF040641-1|AAB94947.2| 203|Caenorhabditis elegans Calponin protein
2 protein.
Length = 203
Score = 26.2 bits (55), Expect = 9.2
Identities = 8/30 (26%), Positives = 18/30 (60%)
Frame = +1
Query: 220 LMESTDPQCHILQHRRPRLPLMQLEAPCSF 309
L+E DP C ++ +++P++ +E +F
Sbjct: 68 LIEKLDPSCRVVYNKKPKMAFPMMENISNF 97
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,746,353
Number of Sequences: 27780
Number of extensions: 160185
Number of successful extensions: 351
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 327
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 351
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 662437636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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