Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10m16r
(709 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces p... 31 0.16
SPCC24B10.02c |||NAD/NADH kinase|Schizosaccharomyces pombe|chr 3... 29 0.49
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po... 29 0.49
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 29 0.86
SPAC1002.15c |pmc5|med6|mediator complex subunit Pmc5 |Schizosac... 27 2.0
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 2.6
SPCC132.04c |||NAD-dependent glutamate dehydrogenase |Schizosacc... 27 3.5
SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces po... 26 4.6
SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr 2... 26 6.1
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 25 8.0
SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces ... 25 8.0
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 8.0
SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual 25 8.0
>SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 489
Score = 31.1 bits (67), Expect = 0.16
Identities = 16/35 (45%), Positives = 18/35 (51%)
Frame = +3
Query: 573 ITMSRMR*ELGSKSTSRCGTADTQARARAKMKAFI 677
I +MR ELG T RC D QA K+K FI
Sbjct: 212 ILFGKMRLELGDHVTVRCPKTDLQADIEFKVKGFI 246
>SPCC24B10.02c |||NAD/NADH kinase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 449
Score = 29.5 bits (63), Expect = 0.49
Identities = 16/62 (25%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Frame = -1
Query: 196 AITIGDVKSNLQINLFGREVGPAVNNFL-EKIPVYLTDYAAEVSRVLEYVAQLVINQITV 20
AITIGD + L + +++GP V +F + +P +LT ++ +S +++ Q++ +++
Sbjct: 178 AITIGDNSTLLYTSWLFQKIGPPVLSFSDDDVPGFLTHFS--LSNYQQHLYQVLTQNVSL 235
Query: 19 NY 14
+
Sbjct: 236 RF 237
>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 811
Score = 29.5 bits (63), Expect = 0.49
Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Frame = -1
Query: 274 ALENVVAEATASVSLADNIIVSDIGAAITIGDVKSNLQINLFGREVGPAVNNFLEKIPVY 95
A E +A S L N+ + AAIT K + + F +E G V E+I
Sbjct: 74 AHEAFIASKIVSGDLKTNL---QVNAAITYCKDKDTIDESEFDKETGVGVVLTPEQIEQL 130
Query: 94 LTDYAAE-VSRVLEYVAQLV 38
+ DY AE S++LE QL+
Sbjct: 131 VGDYVAENKSKILEQRYQLL 150
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 28.7 bits (61), Expect = 0.86
Identities = 16/50 (32%), Positives = 30/50 (60%)
Frame = -1
Query: 154 LFGREVGPAVNNFLEKIPVYLTDYAAEVSRVLEYVAQLVINQITVNYSND 5
+ R++GP V F+ K+P L + ++ + + V +LV+N IT N++ D
Sbjct: 972 IHNRKMGPTVKKFISKLP--LLNINVDLLPLTKNVLRLVLN-ITPNFNWD 1018
>SPAC1002.15c |pmc5|med6|mediator complex subunit Pmc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 216
Score = 27.5 bits (58), Expect = 2.0
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
Frame = +2
Query: 230 EGDGSGSLSNDVLKGKSSGSERPQD-----AAENADFSFSGTD 343
EG LSND L+ S + P D + ENAD+SFS D
Sbjct: 153 EGYTYPKLSNDNLEVDHSNTNEPADENKNQSIENADYSFSPED 195
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 27.1 bits (57), Expect = 2.6
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = -3
Query: 167 PPNQSLRTRSWTSRQQLPREDPCLPDGLRSRGQPCSGVRRP 45
PP S+ S S +P + P +P L QP + V+ P
Sbjct: 144 PPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSP 184
>SPCC132.04c |||NAD-dependent glutamate dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1106
Score = 26.6 bits (56), Expect = 3.5
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = -1
Query: 109 KIPVYLTDYAAEVSRVLEYVAQLVINQITVNYSND 5
K+P + DY EV R+++ A L I +S +
Sbjct: 968 KVPTFYADYVNEVKRIIQRNANLEFEAIWKGHSEN 1002
>SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 449
Score = 26.2 bits (55), Expect = 4.6
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = +2
Query: 203 DVTDNDVVCEGDGSGSLSNDVLKGKSSGSERPQDAAENAD 322
+ DN ++ SGS + D + + G+E+ +D EN +
Sbjct: 325 NAVDNKILLIAMSSGSEALDAILAQMGGTEKVEDVLENVN 364
>SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr
2|||Manual
Length = 803
Score = 25.8 bits (54), Expect = 6.1
Identities = 21/87 (24%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
Frame = +2
Query: 35 DDELGDVLQNTADLGCVVRQVDRDLL*EVVDGWSNFASEEIDL--EVRFDIANSYCSSDV 208
+DEL +VL + V+ ++D + L E D A ++ + ++ ++
Sbjct: 479 EDELSNVLVSIPSRTSVLERLDTNPLNESTDAVVGCAQLYYPSLGKILISLTRNWQTTVF 538
Query: 209 TDNDVVCEGDGSGSLSNDVLKGKSSGS 289
D+D+ G SLSN++ KS G+
Sbjct: 539 DDSDLATMGVNKESLSNEMDYSKSLGT 565
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 25.4 bits (53), Expect = 8.0
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Frame = -1
Query: 316 IFSRVLRSFASGGLALENVVAEATASVSLADNIIVSDIGAAITIGDVKSNLQINLFGREV 137
++S VL+ A L+ V+A A S D VS + A+ D+ S L I L + V
Sbjct: 952 LWSEVLQDSAYRRPLLDQVIATAVPESS--DPEAVSIVVKALMEVDLPSQL-IELLEKIV 1008
Query: 136 ----GPAVNNFLEKIPVYLTDYAAEVSRVLEYVAQL 41
+ N L+ + ++LT A+ SRV+EY+ +L
Sbjct: 1009 LQPSSFSENANLQNL-LFLTAIKADKSRVMEYIDKL 1043
>SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 846
Score = 25.4 bits (53), Expect = 8.0
Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = +2
Query: 233 GDGSGSLSNDVLKGKSSGSERPQ-DAAENADFSFSG 337
G GSG L ND L+ K S P +NA S G
Sbjct: 117 GPGSGKLLNDTLQSKISSIHMPHVQQGDNAVVSSVG 152
>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1038
Score = 25.4 bits (53), Expect = 8.0
Identities = 22/56 (39%), Positives = 26/56 (46%)
Frame = +2
Query: 221 VVCEGDGSGSLSNDVLKGKSSGSERPQDAAENADFSFSGTD*C*NSGNSQD*VESG 388
VV E D +LS LK ++G +AEN S T NSG S D V SG
Sbjct: 817 VVQEEDQRDTLS---LKTSTTGLSSHSKSAENNSTQQSTTSPSINSGASADAVSSG 869
>SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 478
Score = 25.4 bits (53), Expect = 8.0
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +2
Query: 521 ERISRSQQFTDFIEQV*DHDVKDA 592
E +SR QQF D + + ++KDA
Sbjct: 63 EEVSRRQQFVDKLRTILSTEIKDA 86
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,557,432
Number of Sequences: 5004
Number of extensions: 48076
Number of successful extensions: 154
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -