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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10m15r
         (730 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    37   0.003
SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb...    33   0.055
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    31   0.22 
SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M...    30   0.29 
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po...    30   0.39 
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    29   0.51 
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    29   0.51 
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    29   0.90 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   2.1  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    27   2.7  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   3.6  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    26   4.8  
SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ...    26   4.8  
SPAC20H4.05c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual       26   4.8  
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos...    26   6.3  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   6.3  
SPAPYUG7.06 |mug67||PPPDE peptidase family |Schizosaccharomyces ...    26   6.3  
SPBC16A3.12c |||triglyceride lipase-cholesterol esterase |Schizo...    26   6.3  
SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces...    26   6.3  
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    25   8.4  
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo...    25   8.4  

>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 36.7 bits (81), Expect = 0.003
 Identities = 31/119 (26%), Positives = 51/119 (42%), Gaps = 2/119 (1%)
 Frame = +3

Query: 153  TIVTNSGGVQFVGSTVRAGTNSATRLGVSATVGVKVTMSNAVKNTEKTTVGVDCLHISSC 332
            T  TN     F   TV + T+S++   ++A  GV      ++ N E T+      + +  
Sbjct: 806  TSSTNEYNTSFHAPTVSSTTSSSSTTSLAANKGVNSNSITSL-NLESTSSVTSTAYTTDS 864

Query: 333  VTVQGLVVTTPPGPSRIQTGNPVGSATSLSSS--VTDNVRAQAEANQVDSTPIAASVVD 503
            VT       T  GPS     + + S TSLS+S  VT +V     +   +++ +  S  D
Sbjct: 865  VT--STTALTSQGPSSSVVSSSLSSTTSLSTSIPVTSSVAPAVTSTGSETSSVVGSGTD 921



 Score = 27.1 bits (57), Expect = 2.7
 Identities = 16/63 (25%), Positives = 29/63 (46%)
 Frame = -1

Query: 616  TATLLLWTGVVLPTVYTTLPSMEFPVSDSSLATFWSGSSTTEAAIGVEST*LASAWARTL 437
            +AT   WT     +  T+  +     + SS A+ WS SS  + +    +T  +++   T 
Sbjct: 922  SATSSSWTAETSSSAITSSVAASVTPTSSSSASSWSSSSEVDPSTAASATGSSTSSIATA 981

Query: 436  SVT 428
            SV+
Sbjct: 982  SVS 984



 Score = 26.2 bits (55), Expect = 4.8
 Identities = 24/123 (19%), Positives = 53/123 (43%), Gaps = 2/123 (1%)
 Frame = +3

Query: 135 T*SANETIVTNSGGVQFVGSTVRAGTNSATRLG--VSATVGVKVTMSNAVKNTEKTTVGV 308
           T S +  +V+        GS+    T+S+T     +S+ +   ++ S+++  +  +    
Sbjct: 496 TLSTSSEVVSEVSSTLLSGSSAIPSTSSSTPSSSIISSPMTSVLSSSSSIPTSSSSDFSS 555

Query: 309 DCLHISSCVTVQGLVVTTPPGPSRIQTGNPVGSATSLSSSVTDNVRAQAEANQVDSTPIA 488
               ISS ++   +  T     S + +     S+TSLS S +      + A+    + I+
Sbjct: 556 SITTISSGISSSSIPSTFSSVSSILSSSTSSPSSTSLSISSSSTSSTFSSASTSSPSSIS 615

Query: 489 ASV 497
           +S+
Sbjct: 616 SSI 618


>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 262

 Score = 32.7 bits (71), Expect = 0.055
 Identities = 28/107 (26%), Positives = 52/107 (48%), Gaps = 2/107 (1%)
 Frame = +3

Query: 360 TPPGPSRIQTGNPVGSATSLSSSVTDNVRAQAEANQVDSTPIAASVVDEPDQKVAKELSD 539
           TP   S   + +   S+T +SSS+T ++ + A ++   S+  ++  +   D   AK +S 
Sbjct: 148 TPSSSSTTSSSSSSSSSTPISSSITSSISSSASSSVSSSSASSSGSISSAD---AKTVSA 204

Query: 540 TGNS-IDG-SVV*TVGKTTPVHNNNVAVGDGQQGGADHGVHSGVSVA 674
           + NS I G S   T   ++   N++ +      G   +GV + +SVA
Sbjct: 205 SSNSTISGFSTSTTSASSSAAGNSSSSSYTSYSGAVSNGV-AQLSVA 250



 Score = 31.1 bits (67), Expect = 0.17
 Identities = 16/80 (20%), Positives = 35/80 (43%)
 Frame = +3

Query: 381 IQTGNPVGSATSLSSSVTDNVRAQAEANQVDSTPIAASVVDEPDQKVAKELSDTGNSIDG 560
           I +     S +S +++ + +    + ++   STPI++S+        +  +S +  S  G
Sbjct: 133 IYSSTSASSTSSSTATPSSSSTTSSSSSSSSSTPISSSITSSISSSASSSVSSSSASSSG 192

Query: 561 SVV*TVGKTTPVHNNNVAVG 620
           S+     KT    +N+   G
Sbjct: 193 SISSADAKTVSASSNSTISG 212


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 30.7 bits (66), Expect = 0.22
 Identities = 32/110 (29%), Positives = 44/110 (40%), Gaps = 5/110 (4%)
 Frame = +1

Query: 328 PALRFRAWLLPPHLGPAG---SKPV-TLLGLPPACRPALPTTCAPKLKPIKWTRPQLPPP 495
           PA+  R+    P LG A    + PV T   LPP+  P+LP +  P L       P LPP 
Sbjct: 393 PAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPS 452

Query: 496 LLMSQTKKLPRNCPTL-GTPLTAVLYRPLARPRQSTTITLQSETASKAGR 642
             ++    LP   P     P  A    P   P  +  +   +E   + GR
Sbjct: 453 APIA--PPLPAGMPAAPPLPPAAPAPPPAPAPAPAAPVASIAELPQQDGR 500



 Score = 29.1 bits (62), Expect = 0.68
 Identities = 28/86 (32%), Positives = 38/86 (44%), Gaps = 12/86 (13%)
 Frame = +1

Query: 358 PPHLGPA-GSKPVTL-----LGLPPACRPALPTTCAPKLKPI----KWTRPQL--PPPLL 501
           PP   P+ G +P  L     +  PPA  PA+P   AP L P+    + + P +  PP L 
Sbjct: 365 PPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLP 424

Query: 502 MSQTKKLPRNCPTLGTPLTAVLYRPL 579
            S    LP + P    P+ A    PL
Sbjct: 425 PSAPPSLPPSAPP-SLPMGAPAAPPL 449



 Score = 26.6 bits (56), Expect = 3.6
 Identities = 25/63 (39%), Positives = 29/63 (46%)
 Frame = +1

Query: 262 P*AMRSKIPRRPPSVWIAST*APALRFRAWLLPPHLGPAGSKPVTLLGLPPACRPALPTT 441
           P A  S  P  PPS+ + +  AP L   A + PP   PAG        LPPA  PA P  
Sbjct: 425 PSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPL--PAGMPAAP--PLPPAA-PAPPPA 479

Query: 442 CAP 450
            AP
Sbjct: 480 PAP 482


>SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1220

 Score = 30.3 bits (65), Expect = 0.29
 Identities = 32/107 (29%), Positives = 45/107 (42%), Gaps = 1/107 (0%)
 Frame = +3

Query: 111  VLSLIEVVT*SANETIVTNSGGVQFVGSTVRAGTNSAT-RLGVSATVGVKVTMSNAVKNT 287
            V   +EVV  +A     T + G QF  +T+   + S +  + V    G  VT S     +
Sbjct: 890  VTGTVEVVEPAAGTVTGTLTSGSQFFTTTIAQASGSVSGNVEVIEPSGSTVT-STIYSGS 948

Query: 288  EKTTVGVDCLHISSCVTVQGLVVTTPPGPSRIQTGNPVGSATSLSSS 428
            E  T     L + S  T+ G V    P P+ I TG    + T  SSS
Sbjct: 949  ESFTT---TLAVGSG-TIPGTVEVILPAPTTIYTGTVATTITYSSSS 991


>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 507

 Score = 29.9 bits (64), Expect = 0.39
 Identities = 25/77 (32%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
 Frame = +3

Query: 339 VQGLVVTTPPGPSRIQTGNPVGSATSLSSSVTDNVRAQAEANQVDSTPIAASVVDEPD-Q 515
           V G   TTP       + + + S  SLSS+ TDN+ A      V  T +AASV    D  
Sbjct: 146 VYGDSATTPAASEAQASSDILSSLASLSSASTDNLAA-----SVTPTTVAASVASSVDTD 200

Query: 516 KVAKELSDTGNSIDGSV 566
             +  +S   +S   SV
Sbjct: 201 SASATISSVVDSATSSV 217


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 29.5 bits (63), Expect = 0.51
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +1

Query: 406  LPPACRPALPTTCAPKLKPIKWTRPQLPPP 495
            L P+  P LP   + +L P+  TRPQ+P P
Sbjct: 1046 LSPSVTPQLPPVSS-RLPPVSATRPQIPQP 1074


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 29.5 bits (63), Expect = 0.51
 Identities = 22/60 (36%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
 Frame = +1

Query: 325 APALRFRAWLLPPHLGPAGSKPVTLLGLPPACR-PALPTTCAPKLKPIKWTRPQLP-PPL 498
           APAL      LPP   P     V    L P+   P +P T AP L P  +  P +P PP+
Sbjct: 450 APALSMNPSSLPPWQQPTQQSAVQPSNLVPSQNAPFIPGTSAP-LPPTTFAPPGVPLPPI 508


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 28.7 bits (61), Expect = 0.90
 Identities = 30/145 (20%), Positives = 55/145 (37%), Gaps = 2/145 (1%)
 Frame = +3

Query: 75  ITHVEGTSRALIVLSLIEVVT*SANETIVTNSGGVQFVGSTVRAGTN-SATRLGVSATVG 251
           IT    T+       +I   T S +    T S       ++    T+ S    G S+++ 
Sbjct: 72  ITSTSCTTDTSASTPIITESTSSTSSASTTGSSSSPLPSTSTSCTTSTSIPPTGGSSSLS 131

Query: 252 VKVTMSNAVKNTEKTTVGVDCLHISSCVTVQGLVVTTPPGPSRIQTGNPVGSATSLSSSV 431
             +T +    +T  T++ +     SS  T    + TT    +   +  P G ++SLS+ +
Sbjct: 132 TPITPTVPPTSTSSTSIPIPPTSTSSTDTNSNPLPTTSTSCTTSTSIPPTGGSSSLSTPI 191

Query: 432 TDNV-RAQAEANQVDSTPIAASVVD 503
           T  V      +  +   P + S  D
Sbjct: 192 TPTVPPTSTSSTSIPIPPTSTSSTD 216


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 20/65 (30%), Positives = 30/65 (46%)
 Frame = +1

Query: 358  PPHLGPAGSKPVTLLGLPPACRPALPTTCAPKLKPIKWTRPQLPPPLLMSQTKKLPRNCP 537
            PP   P+G+ PV    +     PA  +   P  KP     P +PPP   S+   +P+  P
Sbjct: 1150 PPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGV-PPVPPP---SEAPPVPK--P 1203

Query: 538  TLGTP 552
            ++G P
Sbjct: 1204 SVGVP 1208


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 30/119 (25%), Positives = 48/119 (40%), Gaps = 2/119 (1%)
 Frame = +3

Query: 144 ANETIVTNSGGVQFVGSTVRAG-TNSATRLGVSATVGVK-VTMSNAVKNTEKTTVGVDCL 317
           A+ +  ++S       ST  A  T+SAT   +S+T      T S+   ++  +T      
Sbjct: 150 ASSSTTSSSLASSSTNSTTSATPTSSATSSSLSSTAASNSATSSSLASSSLNSTTSATAT 209

Query: 318 HISSCVTVQGLVVTTPPGPSRIQTGNPVGSATSLSSSVTDNVRAQAEANQVDSTPIAAS 494
             S   T      T+    S   + N   SAT+ SSS++  V +       +ST  A S
Sbjct: 210 SSSLSSTAASNSATSSSLAS--SSLNSTTSATATSSSISSTVSSSTPLTSSNSTTAATS 266


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 15/46 (32%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
 Frame = +1

Query: 358 PPHLGPAGSK-PVTLLGLPPACRPALPTTCAPKLKPIKWTRPQLPP 492
           P    P  SK P     LPP  +PA P    P    +    P +PP
Sbjct: 154 PASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPP 199


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = -1

Query: 586 VLPTVYTTLPSMEFPVSDSSLATFWSGSSTTEAAIGVEST 467
           VLPT   T  S    VS SSL++F    ST     G  +T
Sbjct: 244 VLPTSIITSTSTPVTVSSSSLSSFTPSYSTNLTTTGSTTT 283


>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 599

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 28/106 (26%), Positives = 47/106 (44%), Gaps = 2/106 (1%)
 Frame = +3

Query: 405 SATSLSSSVTDNVRAQAEANQVDSTPIAASVVDEPDQKVAKELSDTGNSIDGSVV*TVGK 584
           S TS+SSS ++N     +  +VDS P  + V D    K  KE S+ G S       T+  
Sbjct: 368 STTSISSSPSENSDTSDDLTKVDS-PNKSLVNDNVSAKHDKE-SENGKSKFPPPSQTLVT 425

Query: 585 TTPVH--NNNVAVGDGQQGGADHGVHSGVSVAVPAVDNNKERQVSI 716
           T+ +    N  +   G +  +D    S  SV +  +    +++ S+
Sbjct: 426 TSTISAAGNEPSDEIGSENDSDSDSDSDSSVPLSQLQKKSQQRNSV 471


>SPAC20H4.05c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 221

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 211 VPALTVEPTNCTPPLFVTIVSLAD 140
           +PAL ++P+ CTP       SL D
Sbjct: 74  MPALRLKPSQCTPLFLAVYTSLRD 97


>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 18/60 (30%), Positives = 24/60 (40%)
 Frame = +1

Query: 382 SKPVTLLGLPPACRPALPTTCAPKLKPIKWTRPQLPPPLLMSQTKKLPRNCPTLGTPLTA 561
           S PV LL       P+LP    PK+K       + P     S   + P     +G+P TA
Sbjct: 321 SSPVPLLAKKREGSPSLPIPILPKMKDTSIPAAE-PASSTTSARDQTPSTPKDVGSPSTA 379


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +1

Query: 373 PAGSKPVTLLGLPPACRPALPTTCAPKLK-PIKWTRPQLPPP 495
           P  S P +++  PP+ +P  P+  AP    P  +  P  PPP
Sbjct: 156 PTVSAPNSMVSPPPSFQP--PSAAAPATSLPSDYNPPPPPPP 195



 Score = 25.8 bits (54), Expect = 6.3
 Identities = 25/78 (32%), Positives = 31/78 (39%), Gaps = 6/78 (7%)
 Frame = +1

Query: 415 ACRPALPTTCAPKLKPIKWTRPQLPPPLLMSQ---TKKLP---RNCPTLGTPLTAVLYRP 576
           A  P +P T  PK        P  PPP L  Q   T +LP   RN   LG+ +   +  P
Sbjct: 218 AVSPEIPPTYTPKQADPLPAPPPPPPPTLPPQSTNTSQLPMPSRNVNNLGSQVN--IPPP 275

Query: 577 LARPRQSTTITLQSETAS 630
            A P Q       + T S
Sbjct: 276 PATPSQPPRPPTNASTRS 293


>SPAPYUG7.06 |mug67||PPPDE peptidase family |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 201

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 16/66 (24%), Positives = 30/66 (45%)
 Frame = +3

Query: 162 TNSGGVQFVGSTVRAGTNSATRLGVSATVGVKVTMSNAVKNTEKTTVGVDCLHISSCVTV 341
           TN+  ++  GS + +  N  +R+G++        + +  KNT       D    SS V  
Sbjct: 109 TNAAAIELTGSPIPSFLNRISRIGLAFPTITNALLQHGQKNTSDVD---DSSDSSSDVDE 165

Query: 342 QGLVVT 359
           + L+V+
Sbjct: 166 ETLIVS 171


>SPBC16A3.12c |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 443

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -1

Query: 214 LVPALTVEPTNCTPPLFVTIVSLADYVTTSIRLRTIS 104
           L+P++T     C PP+FV IV ++  +  +  L  IS
Sbjct: 270 LLPSVTFWQNICYPPIFVKIVDVSLKILFNWDLSNIS 306


>SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -1

Query: 205 ALTVEPTNCTPPLFVTIVSLADYVTTSI 122
           AL+  PTNC   ++   VSL  Y+T+++
Sbjct: 678 ALSKFPTNCLRSVYSHTVSLMKYLTSAV 705


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1334

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 14/52 (26%), Positives = 21/52 (40%)
 Frame = +1

Query: 397 LLGLPPACRPALPTTCAPKLKPIKWTRPQLPPPLLMSQTKKLPRNCPTLGTP 552
           + G P    PA   +    ++P   ++  LPPP      K LP    +L  P
Sbjct: 21  IFGAPRKREPARTVSTPAFMEPAPVSKKPLPPPTRRLPRKPLPFRSTSLQPP 72


>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
           Sap49|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 4/61 (6%)
 Frame = +1

Query: 406 LPPACRPALPTTCAPKLKPIKWTRPQLPP----PLLMSQTKKLPRNCPTLGTPLTAVLYR 573
           LPP   PA P   +    P       +PP    PL+ + T   P + P +  P TA  + 
Sbjct: 210 LPPGFSPATPAPTSAANTPATIAATSIPPVPNVPLVGATTAVPPLSIPNV-LPFTAAQHF 268

Query: 574 P 576
           P
Sbjct: 269 P 269


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,322,287
Number of Sequences: 5004
Number of extensions: 75333
Number of successful extensions: 275
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 273
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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