Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10m13r
         (514 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U20864-9|AAC46661.1|  123|Caenorhabditis elegans Lsm sm-like pro...   151   4e-37
AL117204-26|CAB55132.1|  136|Caenorhabditis elegans Hypothetical...    54   5e-08
Z81118-7|CAB03328.3|   97|Caenorhabditis elegans Hypothetical pr...    48   3e-06
U28738-8|AAA68313.1|  126|Caenorhabditis elegans Small nuclear r...    48   4e-06
U23937-1|AAA65451.1|   71|Caenorhabditis elegans small nuclear r...    46   2e-05
AC025726-13|AAK73913.1|   77|Caenorhabditis elegans Lsm sm-like ...    36   0.013
Z81071-3|CAB03013.1|   91|Caenorhabditis elegans Hypothetical pr...    29   1.5  
L14429-11|AAA28212.1|   85|Caenorhabditis elegans Small nuclear ...    29   2.0  
Z81097-16|CAE17865.1|  122|Caenorhabditis elegans Hypothetical p...    28   4.5  
Z47808-2|CAA87770.1|  415|Caenorhabditis elegans Hypothetical pr...    28   4.5  
Z83216-11|CAB05679.2|  404|Caenorhabditis elegans Hypothetical p...    27   7.9  
Z66494-7|CAA91261.1|  445|Caenorhabditis elegans Hypothetical pr...    27   7.9  

>U20864-9|AAC46661.1|  123|Caenorhabditis elegans Lsm sm-like
           protein protein 4 protein.
          Length = 123

 Score =  151 bits (365), Expect = 4e-37
 Identities = 68/99 (68%), Positives = 86/99 (86%), Gaps = 1/99 (1%)
 Frame = -2

Query: 414 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY 235
           +LPLSLL+TAQNHPMLVELKNGETYNGHL +CD+WMNI+L +VI TS+DGDKF++M E Y
Sbjct: 2   VLPLSLLKTAQNHPMLVELKNGETYNGHLKACDSWMNIHLVDVIFTSKDGDKFFKMSEAY 61

Query: 234 IRGSTIKYLRIPDEVIDMVKEE-TQVKARGRNEVSKGRG 121
           +RGSTIKYLRIP+ V+D+VK E  +V+ + + E S+GRG
Sbjct: 62  VRGSTIKYLRIPETVVDLVKTEVNEVRRQQQREQSRGRG 100


>AL117204-26|CAB55132.1|  136|Caenorhabditis elegans Hypothetical
           protein Y116A8C.42 protein.
          Length = 136

 Score = 54.4 bits (125), Expect = 5e-08
 Identities = 29/89 (32%), Positives = 48/89 (53%)
 Frame = -2

Query: 411 LPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYI 232
           +P+ +L  A+ H + +E   GE Y G L   ++ MN  L E + T RDG +  ++   +I
Sbjct: 6   VPIKILHEAEGHMVTLETVTGEVYRGKLSEAEDNMNCQLAETVVTFRDG-RSHQLDNVFI 64

Query: 231 RGSTIKYLRIPDEVIDMVKEETQVKARGR 145
           RG+ I+++ +P    DM+K     K  GR
Sbjct: 65  RGNKIRFMILP----DMLKNAPMFKNIGR 89


>Z81118-7|CAB03328.3|   97|Caenorhabditis elegans Hypothetical
           protein T10G3.6 protein.
          Length = 97

 Score = 48.4 bits (110), Expect = 3e-06
 Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 3/80 (3%)
 Frame = -2

Query: 414 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRM---P 244
           ML  S  ++     ++VELKN  +  G L S D ++N+ L ++  T  D ++F  M    
Sbjct: 1   MLFFSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNMKLTDI--TVSDPERFPHMVSVK 58

Query: 243 ECYIRGSTIKYLRIPDEVID 184
            C+IRGS ++Y+++P + +D
Sbjct: 59  NCFIRGSVVRYVQLPSDQVD 78


>U28738-8|AAA68313.1|  126|Caenorhabditis elegans Small nuclear
           ribonucleoproteinprotein 3 protein.
          Length = 126

 Score = 48.0 bits (109), Expect = 4e-06
 Identities = 30/87 (34%), Positives = 52/87 (59%), Gaps = 4/87 (4%)
 Frame = -2

Query: 366 VELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDEV- 190
           +ELKNG   +G ++  D  MN +LR V  T ++ +   ++    IRG+ I+Y+ +PD + 
Sbjct: 17  IELKNGTQVSGTIMGVDVAMNTHLRAVSMTVKNKEPV-KLDTLSIRGNNIRYIILPDPLA 75

Query: 189 ID--MVKEETQVKAR-GRNEVSKGRGQ 118
           +D  ++ +E + KAR  R   S+GRG+
Sbjct: 76  LDTLLIDDEPRKKARAARAGASRGRGR 102


>U23937-1|AAA65451.1|   71|Caenorhabditis elegans small nuclear
           ribonucleoprotein protein.
          Length = 71

 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 21/63 (33%), Positives = 37/63 (58%)
 Frame = -2

Query: 384 QNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLR 205
           ++H + +E   GE Y G L   ++ MN  L E + T RDG +  ++   +IRG+ I+++ 
Sbjct: 1   RSHMVTLETVTGEVYRGKLSEAEDNMNCQLAETVVTFRDG-RSHQLDNVFIRGNKIRFMI 59

Query: 204 IPD 196
           +PD
Sbjct: 60  LPD 62


>AC025726-13|AAK73913.1|   77|Caenorhabditis elegans Lsm sm-like
           protein protein 6 protein.
          Length = 77

 Score = 36.3 bits (80), Expect = 0.013
 Identities = 20/67 (29%), Positives = 34/67 (50%)
 Frame = -2

Query: 408 PLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIR 229
           P   L+     P++V+L +G  Y G L   D +MNI L +    S +G    +  + +IR
Sbjct: 7   PAEFLKKVIGKPVVVKLNSGVDYRGILACLDGYMNIALEQTEEYS-NGQLQNKYGDAFIR 65

Query: 228 GSTIKYL 208
           G+ + Y+
Sbjct: 66  GNNVLYI 72


>Z81071-3|CAB03013.1|   91|Caenorhabditis elegans Hypothetical
           protein F28F8.3 protein.
          Length = 91

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
 Frame = -2

Query: 414 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVI--CTSRDGDKFWRMPE 241
           +LPL L+       + V +KN +   G L   D+++N+ L +V+    + DG +  ++  
Sbjct: 12  LLPLELIDKCIGSKIWVIMKNDKEIVGTLTGFDDYVNMVLEDVVEYENTADGKRMTKLDT 71

Query: 240 CYIRGSTIKYL 208
             + G+ I  L
Sbjct: 72  ILLNGNHITML 82


>L14429-11|AAA28212.1|   85|Caenorhabditis elegans Small nuclear
           ribonucleoproteinprotein 5 protein.
          Length = 85

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 19/67 (28%), Positives = 32/67 (47%)
 Frame = -2

Query: 408 PLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIR 229
           P   L +     ++ +LK G  Y G LV+ D++MN+ L        DG+    + E  IR
Sbjct: 9   PKPFLNSLTGKFVVCKLKWGMEYKGVLVAVDSYMNLQLAHAE-EYIDGNSQGNLGEILIR 67

Query: 228 GSTIKYL 208
            + + Y+
Sbjct: 68  CNNVLYV 74


>Z81097-16|CAE17865.1|  122|Caenorhabditis elegans Hypothetical
           protein K07A1.15 protein.
          Length = 122

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 18/72 (25%), Positives = 35/72 (48%)
 Frame = -2

Query: 402 SLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGS 223
           ++L+      + VEL+N     G L SCD+ ++I + +     RD  K    PE  + G 
Sbjct: 16  AVLQGMAGKKVFVELRNDVYVIGILESCDSNLDIRI-QYATIIRDAQK-TEEPEYLVIGK 73

Query: 222 TIKYLRIPDEVI 187
            ++++    +V+
Sbjct: 74  HVRFVHFEHQVV 85


>Z47808-2|CAA87770.1|  415|Caenorhabditis elegans Hypothetical
           protein D2013.2 protein.
          Length = 415

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = -2

Query: 453 NNKLQNEVDHYIKMLPLSLLRTAQNHPMLVELKNGETY 340
           N++    + H++ + P SL  + + + +LV L NG  Y
Sbjct: 63  NDQFWPSIHHFMPVAPTSLYYSEETYKLLVGLINGNVY 100


>Z83216-11|CAB05679.2|  404|Caenorhabditis elegans Hypothetical
           protein C08F11.13 protein.
          Length = 404

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 11/32 (34%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
 Frame = +2

Query: 407 GNILM**STSF*SLLFICIRSLFSYF-RVVWC 499
           GN++   ++ F +LL  C+ ++FS+F ++V+C
Sbjct: 358 GNVVFSPNSLFWALLTFCVFTIFSFFAKIVYC 389


>Z66494-7|CAA91261.1|  445|Caenorhabditis elegans Hypothetical
           protein C34C6.7 protein.
          Length = 445

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -2

Query: 390 TAQNHPMLVELKNGETYNGHLVS 322
           TAQN P L +LKN E    H +S
Sbjct: 264 TAQNVPKLKQLKNQEILKDHFIS 286


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,058,300
Number of Sequences: 27780
Number of extensions: 212112
Number of successful extensions: 574
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 569
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 985905834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)