BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fmgV10m13f (555 letters) Database: mosquito 2352 sequences; 563,979 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein. 25 1.7 AB090817-1|BAC57909.1| 344|Anopheles gambiae gag-like protein p... 25 2.2 AY056833-1|AAL23627.1| 1253|Anopheles gambiae chitin synthase pr... 23 5.1 >AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein. Length = 1376 Score = 25.0 bits (52), Expect = 1.7 Identities = 12/27 (44%), Positives = 17/27 (62%) Frame = +2 Query: 5 KLTIHQTTRK*ENKLLIQINNKLQNEV 85 KLT + T K E K+L++ KLQ E+ Sbjct: 447 KLTANLATLKDETKVLLEEKEKLQTEL 473 >AB090817-1|BAC57909.1| 344|Anopheles gambiae gag-like protein protein. Length = 344 Score = 24.6 bits (51), Expect = 2.2 Identities = 11/21 (52%), Positives = 15/21 (71%) Frame = +2 Query: 110 LSLLRTAQNHPMLVELKNGET 172 +S +R AQN ML+ELK G + Sbjct: 150 ISKVRRAQNGGMLLELKQGSS 170 >AY056833-1|AAL23627.1| 1253|Anopheles gambiae chitin synthase protein. Length = 1253 Score = 23.4 bits (48), Expect = 5.1 Identities = 7/20 (35%), Positives = 12/20 (60%) Frame = -1 Query: 171 VSPFFNSTSIGWFCAVRNKD 112 +S ST + W+C+ + KD Sbjct: 1009 ISQILASTELNWYCSKKAKD 1028 Database: mosquito Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 563,979 Number of sequences in database: 2352 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 504,765 Number of Sequences: 2352 Number of extensions: 9395 Number of successful extensions: 20 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 20 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 20 length of database: 563,979 effective HSP length: 61 effective length of database: 420,507 effective search space used: 51722361 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -