Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10m13f
         (555 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    25   1.7  
AB090817-1|BAC57909.1|  344|Anopheles gambiae gag-like protein p...    25   2.2  
AY056833-1|AAL23627.1| 1253|Anopheles gambiae chitin synthase pr...    23   5.1  

>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 25.0 bits (52), Expect = 1.7
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 5   KLTIHQTTRK*ENKLLIQINNKLQNEV 85
           KLT +  T K E K+L++   KLQ E+
Sbjct: 447 KLTANLATLKDETKVLLEEKEKLQTEL 473


>AB090817-1|BAC57909.1|  344|Anopheles gambiae gag-like protein
           protein.
          Length = 344

 Score = 24.6 bits (51), Expect = 2.2
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +2

Query: 110 LSLLRTAQNHPMLVELKNGET 172
           +S +R AQN  ML+ELK G +
Sbjct: 150 ISKVRRAQNGGMLLELKQGSS 170


>AY056833-1|AAL23627.1| 1253|Anopheles gambiae chitin synthase
            protein.
          Length = 1253

 Score = 23.4 bits (48), Expect = 5.1
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -1

Query: 171  VSPFFNSTSIGWFCAVRNKD 112
            +S    ST + W+C+ + KD
Sbjct: 1009 ISQILASTELNWYCSKKAKD 1028


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 504,765
Number of Sequences: 2352
Number of extensions: 9395
Number of successful extensions: 20
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 51722361
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)