Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10m13f
(555 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC023665-1|AAH23665.1| 139|Homo sapiens LSM4 homolog, U6 small ... 190 3e-48
BC022198-1|AAH22198.1| 139|Homo sapiens LSM4 homolog, U6 small ... 190 3e-48
BC003652-1|AAH03652.1| 139|Homo sapiens LSM4 homolog, U6 small ... 190 3e-48
BC000387-1|AAH00387.1| 139|Homo sapiens LSM4 homolog, U6 small ... 190 3e-48
AJ238096-1|CAB45867.1| 139|Homo sapiens Lsm4 protein protein. 190 3e-48
AF251218-1|AAF90055.1| 139|Homo sapiens LSm4 autoantigen protein. 190 3e-48
AF182290-1|AAD56228.1| 139|Homo sapiens U6 snRNA-associated Sm-... 190 3e-48
AF117235-1|AAF17216.1| 139|Homo sapiens glycine-rich protein pr... 190 3e-48
U15009-1|AAA57034.1| 126|Homo sapiens Sm D3 protein. 59 1e-08
CR456583-1|CAG30469.1| 126|Homo sapiens SNRPD3 protein. 59 1e-08
BC003150-1|AAH03150.1| 126|Homo sapiens small nuclear ribonucle... 59 1e-08
BC000457-1|AAH00457.1| 126|Homo sapiens small nuclear ribonucle... 59 1e-08
BC007623-1|AAH07623.1| 123|Homo sapiens LSM10, U7 small nuclear... 52 2e-06
AF394685-1|AAL07689.1| 123|Homo sapiens U7 snRNA-associated Sm-... 52 2e-06
CR542157-1|CAG46954.1| 95|Homo sapiens LSM2 protein. 48 2e-05
CR542146-1|CAG46943.1| 95|Homo sapiens LSM2 protein. 48 2e-05
BC009192-1|AAH09192.1| 95|Homo sapiens LSM2 homolog, U6 small ... 48 2e-05
BA000025-11|BAB63302.1| 95|Homo sapiens small nuclear ribonucl... 48 2e-05
AL929592-3|CAI18462.1| 95|Homo sapiens LSM2 homolog, U6 small ... 48 2e-05
AL671762-3|CAI18212.1| 95|Homo sapiens LSM2 homolog, U6 small ... 48 2e-05
AL662834-14|CAI17733.1| 95|Homo sapiens LSM2 homolog, U6 small... 48 2e-05
AJ245416-1|CAB52190.1| 95|Homo sapiens G7b protein protein. 48 2e-05
AF196468-1|AAG33023.1| 95|Homo sapiens SMX5-like protein protein. 48 2e-05
AF182288-1|AAD56226.1| 95|Homo sapiens U6 snRNA-associated Sm-... 48 2e-05
AF136977-1|AAG49438.1| 95|Homo sapiens snRNP core SM-like prot... 48 2e-05
AF134726-9|AAD21818.1| 95|Homo sapiens snRNP protein. 48 2e-05
AJ577268-1|CAE11897.1| 119|Homo sapiens small nuclear ribonucle... 46 7e-05
L36188-1|AAA85339.1| 119|Homo sapiens small nuclear ribonucleop... 45 2e-04
J03798-1|AAA36620.1| 119|Homo sapiens protein ( Human autoantig... 45 2e-04
CR542239-1|CAG47035.1| 119|Homo sapiens SNRPD1 protein. 45 2e-04
BC072427-1|AAH72427.1| 119|Homo sapiens small nuclear ribonucle... 45 2e-04
BC001721-1|AAH01721.1| 119|Homo sapiens small nuclear ribonucle... 45 2e-04
X85372-1|CAA59688.1| 86|Homo sapiens Sm protein F protein. 38 0.018
CR456751-1|CAG33032.1| 86|Homo sapiens SNRPF protein. 38 0.018
BC128453-1|AAI28454.1| 86|Homo sapiens small nuclear ribonucle... 38 0.018
BC128452-1|AAI28453.1| 86|Homo sapiens small nuclear ribonucle... 38 0.018
BC063397-1|AAH63397.2| 86|Homo sapiens SNRPF protein protein. 38 0.018
BC002505-1|AAH02505.3| 86|Homo sapiens small nuclear ribonucle... 38 0.018
BC016026-1|AAH16026.1| 80|Homo sapiens LSM6 homolog, U6 small ... 36 0.095
AJ238098-1|CAB45869.1| 80|Homo sapiens Lsm6 protein protein. 36 0.095
AF182292-1|AAD56230.1| 80|Homo sapiens U6 snRNA-associated Sm-... 36 0.095
AC097372-1|AAY41032.1| 80|Homo sapiens unknown protein. 36 0.095
BC009312-1|AAH09312.1| 1003|Homo sapiens Mov10, Moloney leukemia... 30 4.7
BC004499-1|AAH04499.2| 601|Homo sapiens MOV10 protein protein. 30 4.7
BC002548-1|AAH02548.1| 1003|Homo sapiens Mov10, Moloney leukemia... 30 4.7
AL603832-3|CAI14056.1| 947|Homo sapiens Mov10, Moloney leukemia... 30 4.7
AL603832-2|CAI14055.1| 1003|Homo sapiens Mov10, Moloney leukemia... 30 4.7
AK074174-1|BAB85000.1| 925|Homo sapiens FLJ00247 protein protein. 30 4.7
AB046851-1|BAB13457.1| 1032|Homo sapiens KIAA1631 protein protein. 30 4.7
>BC023665-1|AAH23665.1| 139|Homo sapiens LSM4 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 139
Score = 190 bits (463), Expect = 3e-48
Identities = 85/99 (85%), Positives = 90/99 (90%)
Frame = +2
Query: 101 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY 280
MLPLSLL+TAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY
Sbjct: 1 MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY 60
Query: 281 IRGSTIKYLRIPDEVIDMVKEETQVKARGRNEVSKGRGQ 397
IRGSTIKYLRIPDE+IDMVKEE K RGR + + + Q
Sbjct: 61 IRGSTIKYLRIPDEIIDMVKEEVVAKGRGRGGLQQQKQQ 99
>BC022198-1|AAH22198.1| 139|Homo sapiens LSM4 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 139
Score = 190 bits (463), Expect = 3e-48
Identities = 85/99 (85%), Positives = 90/99 (90%)
Frame = +2
Query: 101 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY 280
MLPLSLL+TAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY
Sbjct: 1 MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY 60
Query: 281 IRGSTIKYLRIPDEVIDMVKEETQVKARGRNEVSKGRGQ 397
IRGSTIKYLRIPDE+IDMVKEE K RGR + + + Q
Sbjct: 61 IRGSTIKYLRIPDEIIDMVKEEVVAKGRGRGGLQQQKQQ 99
>BC003652-1|AAH03652.1| 139|Homo sapiens LSM4 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 139
Score = 190 bits (463), Expect = 3e-48
Identities = 85/99 (85%), Positives = 90/99 (90%)
Frame = +2
Query: 101 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY 280
MLPLSLL+TAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY
Sbjct: 1 MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY 60
Query: 281 IRGSTIKYLRIPDEVIDMVKEETQVKARGRNEVSKGRGQ 397
IRGSTIKYLRIPDE+IDMVKEE K RGR + + + Q
Sbjct: 61 IRGSTIKYLRIPDEIIDMVKEEVVAKGRGRGGLQQQKQQ 99
>BC000387-1|AAH00387.1| 139|Homo sapiens LSM4 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 139
Score = 190 bits (463), Expect = 3e-48
Identities = 85/99 (85%), Positives = 90/99 (90%)
Frame = +2
Query: 101 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY 280
MLPLSLL+TAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY
Sbjct: 1 MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY 60
Query: 281 IRGSTIKYLRIPDEVIDMVKEETQVKARGRNEVSKGRGQ 397
IRGSTIKYLRIPDE+IDMVKEE K RGR + + + Q
Sbjct: 61 IRGSTIKYLRIPDEIIDMVKEEVVAKGRGRGGLQQQKQQ 99
>AJ238096-1|CAB45867.1| 139|Homo sapiens Lsm4 protein protein.
Length = 139
Score = 190 bits (463), Expect = 3e-48
Identities = 85/99 (85%), Positives = 90/99 (90%)
Frame = +2
Query: 101 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY 280
MLPLSLL+TAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY
Sbjct: 1 MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY 60
Query: 281 IRGSTIKYLRIPDEVIDMVKEETQVKARGRNEVSKGRGQ 397
IRGSTIKYLRIPDE+IDMVKEE K RGR + + + Q
Sbjct: 61 IRGSTIKYLRIPDEIIDMVKEEVVAKGRGRGGLQQQKQQ 99
>AF251218-1|AAF90055.1| 139|Homo sapiens LSm4 autoantigen protein.
Length = 139
Score = 190 bits (463), Expect = 3e-48
Identities = 85/99 (85%), Positives = 90/99 (90%)
Frame = +2
Query: 101 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY 280
MLPLSLL+TAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY
Sbjct: 1 MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY 60
Query: 281 IRGSTIKYLRIPDEVIDMVKEETQVKARGRNEVSKGRGQ 397
IRGSTIKYLRIPDE+IDMVKEE K RGR + + + Q
Sbjct: 61 IRGSTIKYLRIPDEIIDMVKEEVVAKGRGRGGLQQQKQQ 99
>AF182290-1|AAD56228.1| 139|Homo sapiens U6 snRNA-associated
Sm-like protein LSm4 protein.
Length = 139
Score = 190 bits (463), Expect = 3e-48
Identities = 85/99 (85%), Positives = 90/99 (90%)
Frame = +2
Query: 101 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY 280
MLPLSLL+TAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY
Sbjct: 1 MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY 60
Query: 281 IRGSTIKYLRIPDEVIDMVKEETQVKARGRNEVSKGRGQ 397
IRGSTIKYLRIPDE+IDMVKEE K RGR + + + Q
Sbjct: 61 IRGSTIKYLRIPDEIIDMVKEEVVAKGRGRGGLQQQKQQ 99
>AF117235-1|AAF17216.1| 139|Homo sapiens glycine-rich protein
protein.
Length = 139
Score = 190 bits (463), Expect = 3e-48
Identities = 85/99 (85%), Positives = 90/99 (90%)
Frame = +2
Query: 101 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY 280
MLPLSLL+TAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY
Sbjct: 1 MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY 60
Query: 281 IRGSTIKYLRIPDEVIDMVKEETQVKARGRNEVSKGRGQ 397
IRGSTIKYLRIPDE+IDMVKEE K RGR + + + Q
Sbjct: 61 IRGSTIKYLRIPDEIIDMVKEEVVAKGRGRGGLQQQKQQ 99
>U15009-1|AAA57034.1| 126|Homo sapiens Sm D3 protein.
Length = 126
Score = 58.8 bits (136), Expect = 1e-08
Identities = 33/100 (33%), Positives = 57/100 (57%), Gaps = 2/100 (2%)
Frame = +2
Query: 104 LPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYI 283
+P+ +L A+ H + E GE Y G L+ ++ MN + + T RDG + ++ + YI
Sbjct: 5 VPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDG-RVAQLEQVYI 63
Query: 284 RGSTIKYLRIPDEVIDMVKEETQVKA-RGRNEVS-KGRGQ 397
RGS I++L +P DM+K +K+ + +N+ S GRG+
Sbjct: 64 RGSKIRFLILP----DMLKNAPMLKSMKNKNQGSGAGRGK 99
>CR456583-1|CAG30469.1| 126|Homo sapiens SNRPD3 protein.
Length = 126
Score = 58.8 bits (136), Expect = 1e-08
Identities = 33/100 (33%), Positives = 57/100 (57%), Gaps = 2/100 (2%)
Frame = +2
Query: 104 LPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYI 283
+P+ +L A+ H + E GE Y G L+ ++ MN + + T RDG + ++ + YI
Sbjct: 5 VPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDG-RVAQLEQVYI 63
Query: 284 RGSTIKYLRIPDEVIDMVKEETQVKA-RGRNEVS-KGRGQ 397
RGS I++L +P DM+K +K+ + +N+ S GRG+
Sbjct: 64 RGSKIRFLILP----DMLKNAPMLKSMKNKNQGSGAGRGK 99
>BC003150-1|AAH03150.1| 126|Homo sapiens small nuclear
ribonucleoprotein D3 polypeptide 18kDa protein.
Length = 126
Score = 58.8 bits (136), Expect = 1e-08
Identities = 33/100 (33%), Positives = 57/100 (57%), Gaps = 2/100 (2%)
Frame = +2
Query: 104 LPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYI 283
+P+ +L A+ H + E GE Y G L+ ++ MN + + T RDG + ++ + YI
Sbjct: 5 VPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDG-RVAQLEQVYI 63
Query: 284 RGSTIKYLRIPDEVIDMVKEETQVKA-RGRNEVS-KGRGQ 397
RGS I++L +P DM+K +K+ + +N+ S GRG+
Sbjct: 64 RGSKIRFLILP----DMLKNAPMLKSMKNKNQGSGAGRGK 99
>BC000457-1|AAH00457.1| 126|Homo sapiens small nuclear
ribonucleoprotein D3 polypeptide 18kDa protein.
Length = 126
Score = 58.8 bits (136), Expect = 1e-08
Identities = 33/100 (33%), Positives = 57/100 (57%), Gaps = 2/100 (2%)
Frame = +2
Query: 104 LPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYI 283
+P+ +L A+ H + E GE Y G L+ ++ MN + + T RDG + ++ + YI
Sbjct: 5 VPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDG-RVAQLEQVYI 63
Query: 284 RGSTIKYLRIPDEVIDMVKEETQVKA-RGRNEVS-KGRGQ 397
RGS I++L +P DM+K +K+ + +N+ S GRG+
Sbjct: 64 RGSKIRFLILP----DMLKNAPMLKSMKNKNQGSGAGRGK 99
>BC007623-1|AAH07623.1| 123|Homo sapiens LSM10, U7 small nuclear
RNA associated protein.
Length = 123
Score = 51.6 bits (118), Expect = 2e-06
Identities = 28/96 (29%), Positives = 54/96 (56%), Gaps = 2/96 (2%)
Frame = +2
Query: 116 LLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGST 295
LL+ Q V+L++ +G + + D +MNI L +V T R G + ++ + ++ G
Sbjct: 20 LLQGLQGRVTTVDLRDESVAHGRIDNVDAFMNIRLAKVTYTDRWGHQV-KLDDLFVTGRN 78
Query: 296 IKYLRIPDEV--IDMVKEETQVKARGRNEVSKGRGQ 397
++Y+ IPD+V ++++ Q+ R RN KG+G+
Sbjct: 79 VRYVHIPDDVNITSTIEQQLQIIHRVRNFGGKGQGR 114
>AF394685-1|AAL07689.1| 123|Homo sapiens U7 snRNA-associated
Sm-like protein LSM10 protein.
Length = 123
Score = 51.6 bits (118), Expect = 2e-06
Identities = 28/96 (29%), Positives = 54/96 (56%), Gaps = 2/96 (2%)
Frame = +2
Query: 116 LLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGST 295
LL+ Q V+L++ +G + + D +MNI L +V T R G + ++ + ++ G
Sbjct: 20 LLQGLQGRVTTVDLRDESVAHGRIDNVDAFMNIRLAKVTYTDRWGHQV-KLDDLFVTGRN 78
Query: 296 IKYLRIPDEV--IDMVKEETQVKARGRNEVSKGRGQ 397
++Y+ IPD+V ++++ Q+ R RN KG+G+
Sbjct: 79 VRYVHIPDDVNITSTIEQQLQIIHRVRNFGGKGQGR 114
>CR542157-1|CAG46954.1| 95|Homo sapiens LSM2 protein.
Length = 95
Score = 48.4 bits (110), Expect = 2e-05
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 3/80 (3%)
Frame = +2
Query: 101 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRM---P 271
ML S ++ ++VELKN + G L S D ++NI L ++ T D +K+ M
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVT--DPEKYPHMLSVK 58
Query: 272 ECYIRGSTIKYLRIPDEVID 331
C+IRGS ++Y+++P + +D
Sbjct: 59 NCFIRGSVVRYVQLPADEVD 78
>CR542146-1|CAG46943.1| 95|Homo sapiens LSM2 protein.
Length = 95
Score = 48.4 bits (110), Expect = 2e-05
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 3/80 (3%)
Frame = +2
Query: 101 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRM---P 271
ML S ++ ++VELKN + G L S D ++NI L ++ T D +K+ M
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVT--DPEKYPHMLSVK 58
Query: 272 ECYIRGSTIKYLRIPDEVID 331
C+IRGS ++Y+++P + +D
Sbjct: 59 NCFIRGSVVRYVQLPADEVD 78
>BC009192-1|AAH09192.1| 95|Homo sapiens LSM2 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 95
Score = 48.4 bits (110), Expect = 2e-05
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 3/80 (3%)
Frame = +2
Query: 101 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRM---P 271
ML S ++ ++VELKN + G L S D ++NI L ++ T D +K+ M
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVT--DPEKYPHMLSVK 58
Query: 272 ECYIRGSTIKYLRIPDEVID 331
C+IRGS ++Y+++P + +D
Sbjct: 59 NCFIRGSVVRYVQLPADEVD 78
>BA000025-11|BAB63302.1| 95|Homo sapiens small nuclear ribonuclear
protein D homolog protein.
Length = 95
Score = 48.4 bits (110), Expect = 2e-05
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 3/80 (3%)
Frame = +2
Query: 101 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRM---P 271
ML S ++ ++VELKN + G L S D ++NI L ++ T D +K+ M
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVT--DPEKYPHMLSVK 58
Query: 272 ECYIRGSTIKYLRIPDEVID 331
C+IRGS ++Y+++P + +D
Sbjct: 59 NCFIRGSVVRYVQLPADEVD 78
>AL929592-3|CAI18462.1| 95|Homo sapiens LSM2 homolog, U6 small
nuclear RNA associated (S.ta 2 protein.
Length = 95
Score = 48.4 bits (110), Expect = 2e-05
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 3/80 (3%)
Frame = +2
Query: 101 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRM---P 271
ML S ++ ++VELKN + G L S D ++NI L ++ T D +K+ M
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVT--DPEKYPHMLSVK 58
Query: 272 ECYIRGSTIKYLRIPDEVID 331
C+IRGS ++Y+++P + +D
Sbjct: 59 NCFIRGSVVRYVQLPADEVD 78
>AL671762-3|CAI18212.1| 95|Homo sapiens LSM2 homolog, U6 small
nuclear RNA associated (S.ta 2 protein.
Length = 95
Score = 48.4 bits (110), Expect = 2e-05
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 3/80 (3%)
Frame = +2
Query: 101 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRM---P 271
ML S ++ ++VELKN + G L S D ++NI L ++ T D +K+ M
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVT--DPEKYPHMLSVK 58
Query: 272 ECYIRGSTIKYLRIPDEVID 331
C+IRGS ++Y+++P + +D
Sbjct: 59 NCFIRGSVVRYVQLPADEVD 78
>AL662834-14|CAI17733.1| 95|Homo sapiens LSM2 homolog, U6 small
nuclear RNA associated (S.pha 3 (pseudogene) protein.
Length = 95
Score = 48.4 bits (110), Expect = 2e-05
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 3/80 (3%)
Frame = +2
Query: 101 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRM---P 271
ML S ++ ++VELKN + G L S D ++NI L ++ T D +K+ M
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVT--DPEKYPHMLSVK 58
Query: 272 ECYIRGSTIKYLRIPDEVID 331
C+IRGS ++Y+++P + +D
Sbjct: 59 NCFIRGSVVRYVQLPADEVD 78
>AJ245416-1|CAB52190.1| 95|Homo sapiens G7b protein protein.
Length = 95
Score = 48.4 bits (110), Expect = 2e-05
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 3/80 (3%)
Frame = +2
Query: 101 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRM---P 271
ML S ++ ++VELKN + G L S D ++NI L ++ T D +K+ M
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVT--DPEKYPHMLSVK 58
Query: 272 ECYIRGSTIKYLRIPDEVID 331
C+IRGS ++Y+++P + +D
Sbjct: 59 NCFIRGSVVRYVQLPADEVD 78
>AF196468-1|AAG33023.1| 95|Homo sapiens SMX5-like protein protein.
Length = 95
Score = 48.4 bits (110), Expect = 2e-05
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 3/80 (3%)
Frame = +2
Query: 101 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRM---P 271
ML S ++ ++VELKN + G L S D ++NI L ++ T D +K+ M
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVT--DPEKYPHMLSVK 58
Query: 272 ECYIRGSTIKYLRIPDEVID 331
C+IRGS ++Y+++P + +D
Sbjct: 59 NCFIRGSVVRYVQLPADEVD 78
>AF182288-1|AAD56226.1| 95|Homo sapiens U6 snRNA-associated
Sm-like protein LSm2 protein.
Length = 95
Score = 48.4 bits (110), Expect = 2e-05
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 3/80 (3%)
Frame = +2
Query: 101 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRM---P 271
ML S ++ ++VELKN + G L S D ++NI L ++ T D +K+ M
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVT--DPEKYPHMLSVK 58
Query: 272 ECYIRGSTIKYLRIPDEVID 331
C+IRGS ++Y+++P + +D
Sbjct: 59 NCFIRGSVVRYVQLPADEVD 78
>AF136977-1|AAG49438.1| 95|Homo sapiens snRNP core SM-like protein
SM-x5 protein.
Length = 95
Score = 48.4 bits (110), Expect = 2e-05
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 3/80 (3%)
Frame = +2
Query: 101 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRM---P 271
ML S ++ ++VELKN + G L S D ++NI L ++ T D +K+ M
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVT--DPEKYPHMLSVK 58
Query: 272 ECYIRGSTIKYLRIPDEVID 331
C+IRGS ++Y+++P + +D
Sbjct: 59 NCFIRGSVVRYVQLPADEVD 78
>AF134726-9|AAD21818.1| 95|Homo sapiens snRNP protein.
Length = 95
Score = 48.4 bits (110), Expect = 2e-05
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 3/80 (3%)
Frame = +2
Query: 101 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRM---P 271
ML S ++ ++VELKN + G L S D ++NI L ++ T D +K+ M
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVT--DPEKYPHMLSVK 58
Query: 272 ECYIRGSTIKYLRIPDEVID 331
C+IRGS ++Y+++P + +D
Sbjct: 59 NCFIRGSVVRYVQLPADEVD 78
>AJ577268-1|CAE11897.1| 119|Homo sapiens small nuclear
ribonucleoprotein Sm D1 protein.
Length = 119
Score = 46.4 bits (105), Expect = 7e-05
Identities = 30/97 (30%), Positives = 55/97 (56%), Gaps = 4/97 (4%)
Frame = +2
Query: 119 LRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTI 298
L + +++ELKNG +G + D MN +L+ V T ++ + ++ IRG+ I
Sbjct: 7 LMKLSHETVIIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPV-QLETLSIRGNNI 65
Query: 299 KYLRIPDEV-ID--MVKEETQVKARGRNEVS-KGRGQ 397
+Y +PD + +D +V E +VK++ R V+ +GRG+
Sbjct: 66 RYFILPDSLPLDTLLVDVEPKVKSKKREAVAGRGRGR 102
>L36188-1|AAA85339.1| 119|Homo sapiens small nuclear
ribonucleoprotein protein.
Length = 119
Score = 45.2 bits (102), Expect = 2e-04
Identities = 30/97 (30%), Positives = 54/97 (55%), Gaps = 4/97 (4%)
Frame = +2
Query: 119 LRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTI 298
L + + +ELKNG +G + D MN +L+ V T ++ + ++ IRG+ I
Sbjct: 7 LMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPV-QLETLSIRGNNI 65
Query: 299 KYLRIPDEV-ID--MVKEETQVKARGRNEVS-KGRGQ 397
+Y +PD + +D +V E +VK++ R V+ +GRG+
Sbjct: 66 RYFILPDSLPLDTLLVDVEPKVKSKKREAVAGRGRGR 102
>J03798-1|AAA36620.1| 119|Homo sapiens protein ( Human autoantigen
small nuclear ribonucleoprotein Sm-D mRNA, complete cds.
).
Length = 119
Score = 45.2 bits (102), Expect = 2e-04
Identities = 30/97 (30%), Positives = 54/97 (55%), Gaps = 4/97 (4%)
Frame = +2
Query: 119 LRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTI 298
L + + +ELKNG +G + D MN +L+ V T ++ + ++ IRG+ I
Sbjct: 7 LMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPV-QLETLSIRGNNI 65
Query: 299 KYLRIPDEV-ID--MVKEETQVKARGRNEVS-KGRGQ 397
+Y +PD + +D +V E +VK++ R V+ +GRG+
Sbjct: 66 RYFILPDSLPLDTLLVDVEPKVKSKKREAVAGRGRGR 102
>CR542239-1|CAG47035.1| 119|Homo sapiens SNRPD1 protein.
Length = 119
Score = 45.2 bits (102), Expect = 2e-04
Identities = 30/97 (30%), Positives = 54/97 (55%), Gaps = 4/97 (4%)
Frame = +2
Query: 119 LRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTI 298
L + + +ELKNG +G + D MN +L+ V T ++ + ++ IRG+ I
Sbjct: 7 LMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPV-QLETLSIRGNNI 65
Query: 299 KYLRIPDEV-ID--MVKEETQVKARGRNEVS-KGRGQ 397
+Y +PD + +D +V E +VK++ R V+ +GRG+
Sbjct: 66 RYFILPDSLPLDTLLVDVEPKVKSKKREAVAGRGRGR 102
>BC072427-1|AAH72427.1| 119|Homo sapiens small nuclear
ribonucleoprotein D1 polypeptide 16kDa protein.
Length = 119
Score = 45.2 bits (102), Expect = 2e-04
Identities = 30/97 (30%), Positives = 54/97 (55%), Gaps = 4/97 (4%)
Frame = +2
Query: 119 LRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTI 298
L + + +ELKNG +G + D MN +L+ V T ++ + ++ IRG+ I
Sbjct: 7 LMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPV-QLETLSIRGNNI 65
Query: 299 KYLRIPDEV-ID--MVKEETQVKARGRNEVS-KGRGQ 397
+Y +PD + +D +V E +VK++ R V+ +GRG+
Sbjct: 66 RYFILPDSLPLDTLLVDVEPKVKSKKREAVAGRGRGR 102
>BC001721-1|AAH01721.1| 119|Homo sapiens small nuclear
ribonucleoprotein D1 polypeptide 16kDa protein.
Length = 119
Score = 45.2 bits (102), Expect = 2e-04
Identities = 30/97 (30%), Positives = 54/97 (55%), Gaps = 4/97 (4%)
Frame = +2
Query: 119 LRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTI 298
L + + +ELKNG +G + D MN +L+ V T ++ + ++ IRG+ I
Sbjct: 7 LMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPV-QLETLSIRGNNI 65
Query: 299 KYLRIPDEV-ID--MVKEETQVKARGRNEVS-KGRGQ 397
+Y +PD + +D +V E +VK++ R V+ +GRG+
Sbjct: 66 RYFILPDSLPLDTLLVDVEPKVKSKKREAVAGRGRGR 102
>X85372-1|CAA59688.1| 86|Homo sapiens Sm protein F protein.
Length = 86
Score = 38.3 bits (85), Expect = 0.018
Identities = 24/72 (33%), Positives = 35/72 (48%)
Frame = +2
Query: 107 PLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIR 286
P L P++V+LK G Y G+LVS D +MN+ L DG + E IR
Sbjct: 7 PKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTE-EYIDGALSGHLGEVLIR 65
Query: 287 GSTIKYLRIPDE 322
+ + Y+R +E
Sbjct: 66 CNNVLYIRGVEE 77
>CR456751-1|CAG33032.1| 86|Homo sapiens SNRPF protein.
Length = 86
Score = 38.3 bits (85), Expect = 0.018
Identities = 24/72 (33%), Positives = 35/72 (48%)
Frame = +2
Query: 107 PLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIR 286
P L P++V+LK G Y G+LVS D +MN+ L DG + E IR
Sbjct: 7 PKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTE-EYIDGALSGHLGEVLIR 65
Query: 287 GSTIKYLRIPDE 322
+ + Y+R +E
Sbjct: 66 CNNVLYIRGVEE 77
>BC128453-1|AAI28454.1| 86|Homo sapiens small nuclear
ribonucleoprotein polypeptide F protein.
Length = 86
Score = 38.3 bits (85), Expect = 0.018
Identities = 24/72 (33%), Positives = 35/72 (48%)
Frame = +2
Query: 107 PLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIR 286
P L P++V+LK G Y G+LVS D +MN+ L DG + E IR
Sbjct: 7 PKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTE-EYIDGALSGHLGEVLIR 65
Query: 287 GSTIKYLRIPDE 322
+ + Y+R +E
Sbjct: 66 CNNVLYIRGVEE 77
>BC128452-1|AAI28453.1| 86|Homo sapiens small nuclear
ribonucleoprotein polypeptide F protein.
Length = 86
Score = 38.3 bits (85), Expect = 0.018
Identities = 24/72 (33%), Positives = 35/72 (48%)
Frame = +2
Query: 107 PLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIR 286
P L P++V+LK G Y G+LVS D +MN+ L DG + E IR
Sbjct: 7 PKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTE-EYIDGALSGHLGEVLIR 65
Query: 287 GSTIKYLRIPDE 322
+ + Y+R +E
Sbjct: 66 CNNVLYIRGVEE 77
>BC063397-1|AAH63397.2| 86|Homo sapiens SNRPF protein protein.
Length = 86
Score = 38.3 bits (85), Expect = 0.018
Identities = 24/72 (33%), Positives = 35/72 (48%)
Frame = +2
Query: 107 PLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIR 286
P L P++V+LK G Y G+LVS D +MN+ L DG + E IR
Sbjct: 7 PKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTE-EYIDGALSGHLGEVLIR 65
Query: 287 GSTIKYLRIPDE 322
+ + Y+R +E
Sbjct: 66 CNNVLYIRGVEE 77
>BC002505-1|AAH02505.3| 86|Homo sapiens small nuclear
ribonucleoprotein polypeptide F protein.
Length = 86
Score = 38.3 bits (85), Expect = 0.018
Identities = 24/72 (33%), Positives = 35/72 (48%)
Frame = +2
Query: 107 PLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIR 286
P L P++V+LK G Y G+LVS D +MN+ L DG + E IR
Sbjct: 7 PKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTE-EYIDGALSGHLGEVLIR 65
Query: 287 GSTIKYLRIPDE 322
+ + Y+R +E
Sbjct: 66 CNNVLYIRGVEE 77
>BC016026-1|AAH16026.1| 80|Homo sapiens LSM6 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 80
Score = 35.9 bits (79), Expect = 0.095
Identities = 20/70 (28%), Positives = 34/70 (48%)
Frame = +2
Query: 98 KMLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPEC 277
K P L+ P++V+L +G Y G L D +MNI L + +G + +
Sbjct: 5 KQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTE-EYVNGQLKNKYGDA 63
Query: 278 YIRGSTIKYL 307
+IRG+ + Y+
Sbjct: 64 FIRGNNVLYI 73
>AJ238098-1|CAB45869.1| 80|Homo sapiens Lsm6 protein protein.
Length = 80
Score = 35.9 bits (79), Expect = 0.095
Identities = 20/70 (28%), Positives = 34/70 (48%)
Frame = +2
Query: 98 KMLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPEC 277
K P L+ P++V+L +G Y G L D +MNI L + +G + +
Sbjct: 5 KQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTE-EYVNGQLKNKYGDA 63
Query: 278 YIRGSTIKYL 307
+IRG+ + Y+
Sbjct: 64 FIRGNNVLYI 73
>AF182292-1|AAD56230.1| 80|Homo sapiens U6 snRNA-associated
Sm-like protein LSm6 protein.
Length = 80
Score = 35.9 bits (79), Expect = 0.095
Identities = 20/70 (28%), Positives = 34/70 (48%)
Frame = +2
Query: 98 KMLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPEC 277
K P L+ P++V+L +G Y G L D +MNI L + +G + +
Sbjct: 5 KQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTE-EYVNGQLKNKYGDA 63
Query: 278 YIRGSTIKYL 307
+IRG+ + Y+
Sbjct: 64 FIRGNNVLYI 73
>AC097372-1|AAY41032.1| 80|Homo sapiens unknown protein.
Length = 80
Score = 35.9 bits (79), Expect = 0.095
Identities = 20/70 (28%), Positives = 34/70 (48%)
Frame = +2
Query: 98 KMLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPEC 277
K P L+ P++V+L +G Y G L D +MNI L + +G + +
Sbjct: 5 KQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTE-EYVNGQLKNKYGDA 63
Query: 278 YIRGSTIKYL 307
+IRG+ + Y+
Sbjct: 64 FIRGNNVLYI 73
>BC009312-1|AAH09312.1| 1003|Homo sapiens Mov10, Moloney leukemia
virus 10, homolog (mouse) protein.
Length = 1003
Score = 30.3 bits (65), Expect = 4.7
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +2
Query: 50 LIQINNKLQNEVDHYIKMLPLSLLRTAQNHPMLVELKNGETYNGHLVSC 196
L+ N+ + D Y LLR ++HP ++++ N Y G L +C
Sbjct: 706 LLTYNSLYKKGPDGYDPQFITKLLRNYRSHPTILDIPNQLYYEGELQAC 754
>BC004499-1|AAH04499.2| 601|Homo sapiens MOV10 protein protein.
Length = 601
Score = 30.3 bits (65), Expect = 4.7
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +2
Query: 50 LIQINNKLQNEVDHYIKMLPLSLLRTAQNHPMLVELKNGETYNGHLVSC 196
L+ N+ + D Y LLR ++HP ++++ N Y G L +C
Sbjct: 304 LLTYNSLYKKGPDGYDPQFITKLLRNYRSHPTILDIPNQLYYEGELQAC 352
>BC002548-1|AAH02548.1| 1003|Homo sapiens Mov10, Moloney leukemia
virus 10, homolog (mouse) protein.
Length = 1003
Score = 30.3 bits (65), Expect = 4.7
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +2
Query: 50 LIQINNKLQNEVDHYIKMLPLSLLRTAQNHPMLVELKNGETYNGHLVSC 196
L+ N+ + D Y LLR ++HP ++++ N Y G L +C
Sbjct: 706 LLTYNSLYKKGPDGYDPQFITKLLRNYRSHPTILDIPNQLYYEGELQAC 754
>AL603832-3|CAI14056.1| 947|Homo sapiens Mov10, Moloney leukemia
virus 10, homolog (mouse) protein.
Length = 947
Score = 30.3 bits (65), Expect = 4.7
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +2
Query: 50 LIQINNKLQNEVDHYIKMLPLSLLRTAQNHPMLVELKNGETYNGHLVSC 196
L+ N+ + D Y LLR ++HP ++++ N Y G L +C
Sbjct: 650 LLTYNSLYKKGPDGYDPQFITKLLRNYRSHPTILDIPNQLYYEGELQAC 698
>AL603832-2|CAI14055.1| 1003|Homo sapiens Mov10, Moloney leukemia
virus 10, homolog (mouse) protein.
Length = 1003
Score = 30.3 bits (65), Expect = 4.7
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +2
Query: 50 LIQINNKLQNEVDHYIKMLPLSLLRTAQNHPMLVELKNGETYNGHLVSC 196
L+ N+ + D Y LLR ++HP ++++ N Y G L +C
Sbjct: 706 LLTYNSLYKKGPDGYDPQFITKLLRNYRSHPTILDIPNQLYYEGELQAC 754
>AK074174-1|BAB85000.1| 925|Homo sapiens FLJ00247 protein protein.
Length = 925
Score = 30.3 bits (65), Expect = 4.7
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +2
Query: 50 LIQINNKLQNEVDHYIKMLPLSLLRTAQNHPMLVELKNGETYNGHLVSC 196
L+ N+ + D Y LLR ++HP ++++ N Y G L +C
Sbjct: 731 LLTYNSLYKKGPDGYDPQFITKLLRNYRSHPTILDIPNQLYYEGELQAC 779
>AB046851-1|BAB13457.1| 1032|Homo sapiens KIAA1631 protein protein.
Length = 1032
Score = 30.3 bits (65), Expect = 4.7
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +2
Query: 50 LIQINNKLQNEVDHYIKMLPLSLLRTAQNHPMLVELKNGETYNGHLVSC 196
L+ N+ + D Y LLR ++HP ++++ N Y G L +C
Sbjct: 735 LLTYNSLYKKGPDGYDPQFITKLLRNYRSHPTILDIPNQLYYEGELQAC 783
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,690,382
Number of Sequences: 237096
Number of extensions: 1370515
Number of successful extensions: 2494
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 2438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2472
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5533942988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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