Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10m13f
(555 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g27720.1 68418.m03325 small nuclear ribonucleoprotein, putati... 171 3e-43
At1g20580.1 68414.m02569 small nuclear ribonucleoprotein, putati... 66 2e-11
At1g76300.1 68414.m08862 small nuclear ribonucleoprotein D3, put... 65 3e-11
At1g03330.1 68414.m00312 small nuclear ribonucleoprotein D, puta... 47 7e-06
At4g02840.1 68417.m00384 small nuclear ribonucleoprotein D1, put... 39 0.003
At3g07590.1 68416.m00909 small nuclear ribonucleoprotein D1, put... 37 0.008
At3g59810.1 68416.m06674 small nuclear ribonucleoprotein F, puta... 37 0.010
At4g30220.1 68417.m04298 small nuclear ribonucleoprotein F, puta... 35 0.032
At2g43810.1 68415.m05446 small nuclear ribonucleoprotein F, puta... 34 0.055
At1g05000.1 68414.m00501 tyrosine specific protein phosphatase f... 34 0.055
At4g03960.1 68417.m00559 tyrosine specific protein phosphatase f... 30 0.90
At2g32960.1 68415.m04040 tyrosine specific protein phosphatase f... 29 1.6
At3g02800.1 68416.m00272 tyrosine specific protein phosphatase f... 29 2.1
At5g16480.1 68418.m01926 tyrosine specific protein phosphatase f... 29 2.8
At5g44980.1 68418.m05516 F-box family protein contains F-box dom... 27 6.4
At3g15430.2 68416.m01958 regulator of chromosome condensation (R... 27 8.4
At3g15430.1 68416.m01957 regulator of chromosome condensation (R... 27 8.4
>At5g27720.1 68418.m03325 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to
SWISS-PROT:Q9QXA5 U6 snRNA-associated Sm-like protein
LSm4 [Mus musculus]
Length = 129
Score = 171 bits (416), Expect = 3e-43
Identities = 76/101 (75%), Positives = 87/101 (86%)
Frame = +2
Query: 101 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY 280
MLPLSLL+TAQ HPMLVELKNGETYNGHLV+CD WMNI+LREVICTS+DGD+FWRMPECY
Sbjct: 1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60
Query: 281 IRGSTIKYLRIPDEVIDMVKEETQVKARGRNEVSKGRGQNM 403
IRG+TIKYLR+PDEVID V+EE R V +GRG+ +
Sbjct: 61 IRGNTIKYLRVPDEVIDKVQEEKTRTDRKPPGVGRGRGRGV 101
>At1g20580.1 68414.m02569 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to
small nuclear ribonucleoprotein Sm D3 (snRNP core
protein D3, Sm-D3) [Mus musculus] SWISS-PROT:P43331
Length = 131
Score = 65.7 bits (153), Expect = 2e-11
Identities = 37/102 (36%), Positives = 61/102 (59%), Gaps = 5/102 (4%)
Frame = +2
Query: 104 LPLSLLRTAQNHPMLVELKNGETYNGHLVSC-DNWMNINLREVICTSRDGDKFWRMPECY 280
+P+ LL A H + VELK+GE Y G ++ C DNW N L ++ T++DG K ++ +
Sbjct: 7 IPVKLLHEASGHIVTVELKSGELYRGSMIECEDNW-NCQLEDITYTAKDG-KVSQLEHVF 64
Query: 281 IRGSTIKYLRIPD--EVIDMVKE-ETQVKARGRN-EVSKGRG 394
IRGS ++++ IPD + M K + ++K + + V +GRG
Sbjct: 65 IRGSKVRFMVIPDILKHAPMFKRLDARIKGKSSSLGVGRGRG 106
>At1g76300.1 68414.m08862 small nuclear ribonucleoprotein D3,
putative / snRNP core protein D3, putative / Sm protein
D3, putative similar to SWISS-PROT:P43331 small nuclear
ribonucleoprotein Sm D3 (snRNP core protein D3, Sm-D3)
[Mouse]
Length = 128
Score = 64.9 bits (151), Expect = 3e-11
Identities = 36/104 (34%), Positives = 60/104 (57%), Gaps = 4/104 (3%)
Frame = +2
Query: 104 LPLSLLRTAQNHPMLVELKNGETYNGHLVSC-DNWMNINLREVICTSRDGDKFWRMPECY 280
+P+ LL + H + VE+K+GE Y G ++ C DNW N L + T++DG K ++ +
Sbjct: 7 IPVKLLHESSGHIVSVEMKSGELYRGSMIECEDNW-NCQLENITYTAKDG-KVSQLEHVF 64
Query: 281 IRGSTIKYLRIPDEVIDMVKEETQVKARGRNE---VSKGRGQNM 403
IRGS +++L IPD ++ V+ +G++ V +GRG M
Sbjct: 65 IRGSLVRFLVIPD-MLKNAPMFKDVRGKGKSASLGVGRGRGAAM 107
>At1g03330.1 68414.m00312 small nuclear ribonucleoprotein D,
putative / snRNP core SM-like protein, putative / U6
snRNA-associated Sm-like protein, putative similar to
SWISS-PROT:Q9Y333 U6 snRNA-associated Sm-like protein
LSm2 (Small nuclear ribonuclear protein D homolog, G7b,
SnRNP core SM-like protein SM-x5) [Homo sapiens]
Length = 93
Score = 47.2 bits (107), Expect = 7e-06
Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 5/94 (5%)
Frame = +2
Query: 101 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRM---P 271
ML S + + VELKN G L S D ++NI L D DK+ M
Sbjct: 1 MLFFSYFKDLVGQEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVR 58
Query: 272 ECYIRGSTIKYLRIP-DEV-IDMVKEETQVKARG 367
C+IRGS ++Y+++P D V +D++ + + +ARG
Sbjct: 59 NCFIRGSVVRYVQLPKDGVDVDLLHDAARREARG 92
>At4g02840.1 68417.m00384 small nuclear ribonucleoprotein D1,
putative / snRNP core protein D1, putative / Sm protein
D1, putative similar to small nuclear ribonucleoprotein
Sm D1 (snRNP core protein D1, Sm-D1, Sm-D autoantigen)
[Mouse] SWISS-PROT:P13641
Length = 116
Score = 38.7 bits (86), Expect = 0.003
Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 7/100 (7%)
Frame = +2
Query: 119 LRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTI 298
L N + +ELKNG +G + D MN +L+ V T + G + +RG+ I
Sbjct: 7 LMKLNNETVSIELKNGTIVHGTITGVDVSMNTHLKAVKLTLK-GKNPVTLDHLSVRGNNI 65
Query: 299 KYLRIPDEV---IDMVKEETQVKAR----GRNEVSKGRGQ 397
+Y +PD + +V++ ++K + G+ +GRG+
Sbjct: 66 RYYILPDSLNLETLLVEDTPRIKPKKPTAGKIPAGRGRGR 105
>At3g07590.1 68416.m00909 small nuclear ribonucleoprotein D1,
putative / snRNP core protein D1, putative / Sm protein
D1, putative similar to SWISS-PROT:SP|P13641 small
nuclear ribonucleoprotein Sm D1 (snRNP core protein D1,
Sm-D1, Sm-D autoantigen)[Mouse]
Length = 114
Score = 37.1 bits (82), Expect = 0.008
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 6/99 (6%)
Frame = +2
Query: 119 LRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTI 298
L N + +ELKNG +G + D MN +L+ + S G + +RG+ I
Sbjct: 7 LMKLNNETVSIELKNGTVVHGTITGVDVSMNTHLK-TVKMSLKGKNPVTLDHLSLRGNNI 65
Query: 299 KYLRIPDEV---IDMVKEETQVKAR---GRNEVSKGRGQ 397
+Y +PD + +V++ +VK + V +GRG+
Sbjct: 66 RYYILPDSLNLETLLVEDTPRVKPKKPVAGKAVGRGRGR 104
>At3g59810.1 68416.m06674 small nuclear ribonucleoprotein F,
putative / U6 snRNA-associated Sm-like protein, putative
/ Sm protein F, putative similar to SWISS-PROT:Q9Y4Y8 U6
snRNA-associated Sm-like protein LSm6 [Mus musculus]
Length = 91
Score = 36.7 bits (81), Expect = 0.010
Identities = 18/67 (26%), Positives = 35/67 (52%)
Frame = +2
Query: 107 PLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIR 286
P L++ + P++V+L +G Y G L D +MNI + + +G + + +IR
Sbjct: 15 PADFLKSIRGRPVVVKLNSGVDYRGTLTCLDGYMNIAMEQTE-EYVNGQLKNKYGDAFIR 73
Query: 287 GSTIKYL 307
G+ + Y+
Sbjct: 74 GNNVLYI 80
>At4g30220.1 68417.m04298 small nuclear ribonucleoprotein F,
putative / snRNP-F, putative / Sm protein F, putative
similar to SWISS-PROT:Q15356 small nuclear
ribonucleoprotein F (snRNP-F, Sm protein F, Sm-F, SmF)
[Mouse]
Length = 88
Score = 35.1 bits (77), Expect = 0.032
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Frame = +2
Query: 95 IKMLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPE 274
I + P L ++V+LK G Y G L S D++MN+ L DG + E
Sbjct: 4 IPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNTE-EYIDGQLTGNLGE 62
Query: 275 CYIRGSTIKYLR-IPDE 322
IR + + Y+R +P++
Sbjct: 63 ILIRCNNVLYVRGVPED 79
>At2g43810.1 68415.m05446 small nuclear ribonucleoprotein F,
putative / U6 snRNA-associated Sm-like protein, putative
/ Sm protein F, putative similar to SWISS-PROT:Q9Y4Y8 U6
snRNA-associated Sm-like protein LSm6 [Mus musculus]
Length = 91
Score = 34.3 bits (75), Expect = 0.055
Identities = 17/67 (25%), Positives = 34/67 (50%)
Frame = +2
Query: 107 PLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIR 286
P L++ + P++V+L +G Y G L D +MNI + + +G + ++R
Sbjct: 15 PADFLKSIRGKPVVVKLNSGVDYRGILTCLDGYMNIAMEQTE-EYVNGQLKNTYGDAFVR 73
Query: 287 GSTIKYL 307
G+ + Y+
Sbjct: 74 GNNVLYI 80
>At1g05000.1 68414.m00501 tyrosine specific protein phosphatase
family protein contains tyrosine specific protein
phosphatases active site, PROSITE:PS00383
Length = 215
Score = 34.3 bits (75), Expect = 0.055
Identities = 24/81 (29%), Positives = 38/81 (46%)
Frame = +2
Query: 77 NEVDHYIKMLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDK 256
N DH I+M L +L +NHP+L+ K G+ G LV C + + C + D+
Sbjct: 125 NIPDHKIRMA-LKVLLDEKNHPVLIHCKRGKHRTGCLVGC-----LRKLQKWCLTSIFDE 178
Query: 257 FWRMPECYIRGSTIKYLRIPD 319
+ R R S +++ I D
Sbjct: 179 YQRFAAAKARVSDQRFMEIFD 199
>At4g03960.1 68417.m00559 tyrosine specific protein phosphatase
family protein contains tyrosine specific protein
phosphatases active site, PROSITE:PS00383
Length = 198
Score = 30.3 bits (65), Expect = 0.90
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 110 LSLLRTAQNHPMLVELKNGETYNGHLVSC 196
L +L +NHP+L+ K+G+ G LV C
Sbjct: 111 LQVLLDTENHPVLIHCKSGKHRTGCLVGC 139
>At2g32960.1 68415.m04040 tyrosine specific protein phosphatase
family protein contains Pfam profile PF03162: Putative
tyrosine phosphatase family
Length = 257
Score = 29.5 bits (63), Expect = 1.6
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 110 LSLLRTAQNHPMLVELKNGETYNGHLVSC 196
L +L +NHP+L+ K G+ G LV C
Sbjct: 177 LKVLLDEKNHPLLIHCKRGKHRTGCLVGC 205
>At3g02800.1 68416.m00272 tyrosine specific protein phosphatase
family protein contains tyrosine specific protein
phosphatases active site, PROSITE:PS00383
Length = 199
Score = 29.1 bits (62), Expect = 2.1
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 110 LSLLRTAQNHPMLVELKNGETYNGHLVSC 196
L +L +NHP+L+ K G+ G LV C
Sbjct: 93 LKVLVDVRNHPILIHCKRGKHRTGCLVGC 121
>At5g16480.1 68418.m01926 tyrosine specific protein phosphatase
family protein contains tyrosine specific protein
phosphatases active site, PROSITE:PS00383
Length = 204
Score = 28.7 bits (61), Expect = 2.8
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 110 LSLLRTAQNHPMLVELKNGETYNGHLVSC 196
L +L +NHP+L+ K G+ G LV C
Sbjct: 96 LRVLVDVRNHPILIHCKRGKHRTGCLVGC 124
>At5g44980.1 68418.m05516 F-box family protein contains F-box domain
Pfam:PF00646
Length = 435
Score = 27.5 bits (58), Expect = 6.4
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +2
Query: 185 LVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPD 319
L SC N N+ L + R+ F +P+C I ST++Y+ I +
Sbjct: 336 LESCPNLKNLILEYNVELDREQVDFTNVPQCLI--STLEYVEIKE 378
>At3g15430.2 68416.m01958 regulator of chromosome condensation
(RCC1) family protein low similarity to UVB-resistance
protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
Pfam profile PF00415: Regulator of chromosome
condensation (RCC1)
Length = 488
Score = 27.1 bits (57), Expect = 8.4
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -1
Query: 372 LRPRALTCVSSFTMSMTSSGILKYLIVLPR 283
LRPR L C+ +S S+G+ ++V R
Sbjct: 419 LRPRVLECLKPHRVSQVSTGLYHTIVVTQR 448
>At3g15430.1 68416.m01957 regulator of chromosome condensation
(RCC1) family protein low similarity to UVB-resistance
protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
Pfam profile PF00415: Regulator of chromosome
condensation (RCC1)
Length = 488
Score = 27.1 bits (57), Expect = 8.4
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -1
Query: 372 LRPRALTCVSSFTMSMTSSGILKYLIVLPR 283
LRPR L C+ +S S+G+ ++V R
Sbjct: 419 LRPRVLECLKPHRVSQVSTGLYHTIVVTQR 448
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,388,529
Number of Sequences: 28952
Number of extensions: 194450
Number of successful extensions: 502
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 498
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1053014392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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