Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10m11r
         (758 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51021| Best HMM Match : Podocalyxin (HMM E-Value=3.3)               38   0.007
SB_50450| Best HMM Match : 7tm_1 (HMM E-Value=0.21)                    31   1.3  
SB_10209| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_3147| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.4  
SB_6930| Best HMM Match : FAD_binding_7 (HMM E-Value=0)                28   7.2  
SB_53811| Best HMM Match : Mab-21 (HMM E-Value=0.003)                  28   7.2  
SB_12134| Best HMM Match : Toxin_4 (HMM E-Value=1.3)                   28   9.5  

>SB_51021| Best HMM Match : Podocalyxin (HMM E-Value=3.3)
          Length = 525

 Score = 38.3 bits (85), Expect = 0.007
 Identities = 16/40 (40%), Positives = 25/40 (62%)
 Frame = -1

Query: 680 FYGELYKDDPVMLAKKIEECSKHRGRHNPERPKTPPNYWN 561
           +YG L       L K+++ CS+HR +++P  P TPP +WN
Sbjct: 439 YYGSLNLPQEE-LQKRLKLCSRHRAKYSPP-PSTPPGFWN 476


>SB_50450| Best HMM Match : 7tm_1 (HMM E-Value=0.21)
          Length = 250

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -3

Query: 555 VERTRGHGGTQSNEQCCVDYCIRGEGVVTLHNWNNKNYFYISFLLL 418
           + R   H GTQ +  C     +R    V L N+ + N+++I+ L L
Sbjct: 120 IRRDLNHNGTQRSHNCHYHRLLRWHLEVCLSNFADANFYHIAILAL 165


>SB_10209| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 798

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
 Frame = -1

Query: 704 WSCEGCKNFY-GELYKDDPVMLAKKIEECSKHRGRHNPERPKTPPNYWNPRWNVPEDTE 531
           W    C  F+ G++    PV + KK++    +  ++ PE    P  Y    W  P+D +
Sbjct: 698 WLWLSCSAFFHGQIPWFCPVEVGKKLDPSGSYIRKYVPELRSMPLKYLYEPWTAPDDIQ 756


>SB_3147| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -1

Query: 656 DPVMLAKKIEECSKHRGRHNPERPKTPPNYWNPRW 552
           D V L K  E C KH+ RHN ++P   P   +  W
Sbjct: 428 DVVSLVKTCEACQKHQ-RHNQKQPILQPEPLSYPW 461


>SB_6930| Best HMM Match : FAD_binding_7 (HMM E-Value=0)
          Length = 506

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
 Frame = -1

Query: 704 WSCEGCKNFYGELYKD-DPVMLAKKIEECSKHRGRHNPERPKTPPNYWNPRWNVPEDTEE 528
           W      +F+   ++   PV   KK +    +  ++ P+  + PP Y    WN P   +E
Sbjct: 369 WMWLSASSFFHAYFRVYSPVAFGKKTDPNGDYIRKYIPKLSRYPPKYIYEPWNAPLAVQE 428


>SB_53811| Best HMM Match : Mab-21 (HMM E-Value=0.003)
          Length = 700

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = -1

Query: 602 HNPERPKTPPNYWNPRWNVPEDTEELNRMNNAV*IIASVVKESSRYII 459
           HN  R K+ P+YW P  N+ ED   +   N A  +   + K+   + I
Sbjct: 287 HNALRDKSLPHYWIPSVNLLEDISNVVLENMAARLEKILTKDRELFKI 334


>SB_12134| Best HMM Match : Toxin_4 (HMM E-Value=1.3)
          Length = 210

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -3

Query: 570 LLEPEVERTRGHGGTQSNEQCC 505
           LL   V ++RG GG  SN  CC
Sbjct: 15  LLPTAVRKSRGRGGVNSNCDCC 36


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,085,413
Number of Sequences: 59808
Number of extensions: 563904
Number of successful extensions: 1541
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1540
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)