Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10m11r
         (758 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g52115.1 68416.m05720 hypothetical protein                          41   0.001
At1g55960.1 68414.m06418 expressed protein weak similarity to SP...    29   4.4  
At3g23970.1 68416.m03011 F-box family protein contains Pfam:PF00...    28   7.7  

>At3g52115.1 68416.m05720 hypothetical protein
          Length = 588

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
 Frame = -1

Query: 743 TIRKXXEKRALPGWSCEGCKNFYGELYKDDPVMLAKKI-----EECSKHRGRHNPERPKT 579
           ++RK  E+  L G  C+ CK FY  ++ ++     K +     E  S+HR R+ P  P T
Sbjct: 518 SVRKKAERENLKGIECKQCKKFYDAVHPENEGNGNKSLRCEHHEGVSRHRYRYAP--PMT 575

Query: 578 PPNYWN 561
           P  +WN
Sbjct: 576 PEGFWN 581


>At1g55960.1 68414.m06418 expressed protein weak similarity to
           SP|P53808 Phosphatidylcholine transfer protein (PC-TP)
           {Mus musculus}
          Length = 403

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = -1

Query: 263 YCFTAEIDGVVVPTRADSQEVLPPVIILRNHWRVLRDPNRHA 138
           YCFT E D  +VP     Q     V   R+ WR+ + P R+A
Sbjct: 212 YCFTKECDHNMVP----QQRKYVRVSYFRSGWRIRQVPGRNA 249


>At3g23970.1 68416.m03011 F-box family protein contains Pfam:PF00646
           F-box domain
          Length = 413

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -3

Query: 528 TQSNEQCCVDYCIRGEGVVTLHNWNNKNYFYIS-FLLLRWMDEL 400
           T+  + C + +    E + T+HN+   NY   S ++L RW+  L
Sbjct: 364 TKCMDGCTLSFNRCSEYMETIHNYGGPNYLLASQYVLPRWLHRL 407


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,206,464
Number of Sequences: 28952
Number of extensions: 371795
Number of successful extensions: 912
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 890
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 912
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1692519896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)