Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10m11f
         (556 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4B3.18 |||phosphopantothenate-cysteine ligase|Schizosaccharo...    30   0.20 
SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual    27   1.9  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    27   2.5  
SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces po...    25   5.7  
SPAC17G8.09 |shg1||Csp15 family protein|Schizosaccharomyces pomb...    25   5.7  
SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces po...    25   9.9  
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po...    25   9.9  

>SPCC4B3.18 |||phosphopantothenate-cysteine
           ligase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 316

 Score = 30.3 bits (65), Expect = 0.20
 Identities = 16/59 (27%), Positives = 27/59 (45%)
 Frame = +1

Query: 181 QALDSVLQQSFHYLKGIVSDFEVLQSESENYKTQFEIQKQKCESESCPSAEALKKVIDT 357
           + L  +  ++  YL   VSDF +   E   +K Q      K E +  P  + L+ ++DT
Sbjct: 164 ERLQIIASRALFYLAAAVSDFHIPPKELSEHKIQSGSGSNKLEVKMHPVPKFLRFLVDT 222


>SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 304

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 15/54 (27%), Positives = 29/54 (53%)
 Frame = +1

Query: 220 LKGIVSDFEVLQSESENYKTQFEIQKQKCESESCPSAEALKKVIDTKNNIIGLV 381
           LKG  ++++     +++Y  +FE QK+K    S  S   + ++ + K  IIG +
Sbjct: 152 LKGQQNNWKRYNPTTKSYLEEFESQKEKLVYLSADSDNTITELDEDKIYIIGAI 205


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 7/74 (9%)
 Frame = +1

Query: 175  KIQALDSVLQQSFHYLKGIVSDFEVLQ---SES----ENYKTQFEIQKQKCESESCPSAE 333
            KI++++S L      L   V     LQ   SES    EN K+Q +  K+K + +     E
Sbjct: 1461 KIESINSSLDDKSFELASAVEKLGALQKLHSESLSLMENIKSQLQEAKEKIQVDESTIQE 1520

Query: 334  ALKKVIDTKNNIIG 375
               ++  +KNN  G
Sbjct: 1521 LDHEITASKNNYEG 1534


>SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 742

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
 Frame = +1

Query: 187 LDSVLQQSFHYLKGIVSDFEVLQ--SESENYKTQFE-IQKQKCESESCPSAEALKK 345
           +DSV  ++   L G+ +D +VLQ   E E+ +   E +QK+K    +  S + L K
Sbjct: 129 IDSVATETGKLLSGLANDSKVLQQTEEGEDAENDDEDLQKKKERKRAQRSVKTLVK 184


>SPAC17G8.09 |shg1||Csp15 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 128

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +1

Query: 289 IQKQKCESESCPSAEALKKVID 354
           ++KQ  E+ES P  + LKK+ID
Sbjct: 25  LRKQILETESGPLLDRLKKIID 46


>SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 373

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 8/58 (13%)
 Frame = +1

Query: 247 VLQSESE-NYKTQFEIQKQKCESESCPSAEA-------LKKVIDTKNNIIGLVASTLT 396
           +LQ+  E N K ++++    C+  S  S +        L K +DT N  I L+A TLT
Sbjct: 13  ILQATDEKNTKEKWDVIMDACDQLSSTSGDVGRNSIKFLNKRLDTANANIQLLALTLT 70


>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1057

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 361 NNIIGLVASTLTKLYETKNFD 423
           N+II  V   L  LY++ NFD
Sbjct: 369 NSIIDYVCDALAALYKSNNFD 389


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.131    0.359 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,843,139
Number of Sequences: 5004
Number of extensions: 31426
Number of successful extensions: 150
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)