Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10m11f
         (556 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1078 + 34378985-34380064,34380155-34380283,34380362-343804...    32   0.35 
03_04_0205 - 18485933-18488446                                         31   0.82 
10_08_0814 - 20779400-20779487,20779780-20780030,20780528-207808...    29   3.3  
02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,162...    28   5.8  
06_03_0599 + 22632625-22633030,22634733-22636724,22636819-22637171     27   7.6  

>01_06_1078 +
           34378985-34380064,34380155-34380283,34380362-34380430,
           34380536-34380588,34381309-34381421,34381565-34382132,
           34382520-34382580,34382624-34382665
          Length = 704

 Score = 31.9 bits (69), Expect = 0.35
 Identities = 18/47 (38%), Positives = 23/47 (48%)
 Frame = -1

Query: 511 LLLDSISQFQAMLDWLYWICIVF*MLL*VCQSFLFHIVLLMLMQLIR 371
           LL D+IS  Q    WLYW+C     +    + FL H+    L QL R
Sbjct: 82  LLSDAISFIQDTKSWLYWVCPNCERMFLDSEGFLLHLENEHLPQLPR 128


>03_04_0205 - 18485933-18488446
          Length = 837

 Score = 30.7 bits (66), Expect = 0.82
 Identities = 23/81 (28%), Positives = 37/81 (45%)
 Frame = -3

Query: 539 LNFSLQALDSAIGLNFSVSSNAGLVVLDLYSILNASVSMSKFFVSYSFVNVDATNPMILF 360
           L+F  Q  + AI +        G  ++D Y+  N   S  K F S    N  + N +++ 
Sbjct: 380 LDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEVSWNTIVVG 439

Query: 359 FVSITFFNASALGQDSLSHFC 297
           F      + S LG+++LS FC
Sbjct: 440 F------SQSGLGEEALSVFC 454


>10_08_0814 -
           20779400-20779487,20779780-20780030,20780528-20780812,
           20781563-20782008,20782095-20782485
          Length = 486

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +1

Query: 238 DFEVLQSESENYKTQFEIQKQKCESESCPSAEALKKVIDTKN-NIIGLVASTLTKL 402
           +F+VL+   E   + F++     E  + P  E L K + T+N + +  + S LT+L
Sbjct: 218 EFQVLELALETVCSSFDVNVSGLERRATPVLEELTKNVSTRNLDRVRTLKSDLTRL 273


>02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,
            1625603-1625887,1626016-1626030,1626339-1626419,
            1626909-1627322,1627423-1627719,1627801-1629864
          Length = 3057

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 20/104 (19%), Positives = 48/104 (46%)
 Frame = +1

Query: 241  FEVLQSESENYKTQFEIQKQKCESESCPSAEALKKVIDTKNNIIGLVASTLTKLYETKNF 420
            ++V     ++ +T  E+++  C+ E+    +  +  I +K  +I   A+   K  E ++F
Sbjct: 2574 YDVEMDVQKSLETDEELKRNTCDLEAPVYQDNAQDEISSK--LISAKAADPIKKMEARDF 2631

Query: 421  DILTEAFKILYKSNTTNPALLETEKLSPIAESRACNEKLREDSL 552
            ++  E+F  + + N      +E   L+   +     +  +ED+L
Sbjct: 2632 ELDEESFDTVCQENVEAATEIEDGSLNRDQDDITSPKASQEDAL 2675


>06_03_0599 + 22632625-22633030,22634733-22636724,22636819-22637171
          Length = 916

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
 Frame = +1

Query: 175 KIQALDSVLQQSFHYLKGIVSDFEVLQSESENYKTQFEIQKQKCESESCPSAEALKKVID 354
           KI +L  VL  S++YL G +SD EV    S N K      +   +  S  S   + + ++
Sbjct: 386 KISSLSIVLDLSYNYLSGSISD-EVGNLVSLN-KLIISYNRLSGDIPSTLSQCVVLEYLE 443

Query: 355 TKNN-IIGLVASTLTKLYETKNFDI 426
            ++N  +G +  T   +   K  DI
Sbjct: 444 MQSNFFVGSIPQTFVNMVGIKVMDI 468


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.317    0.131    0.359 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,206,322
Number of Sequences: 37544
Number of extensions: 148943
Number of successful extensions: 487
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 487
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)