Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10m11f
(556 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_38066| Best HMM Match : FlaF_arch (HMM E-Value=1.2) 30 1.5
SB_45321| Best HMM Match : Shugoshin_N (HMM E-Value=2.4) 30 1.5
SB_6220| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0089) 30 1.5
SB_29553| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.5
SB_58198| Best HMM Match : Exo_endo_phos (HMM E-Value=0.012) 28 5.9
SB_7623| Best HMM Match : SURF6 (HMM E-Value=2.6) 28 5.9
SB_3609| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_2434| Best HMM Match : Vicilin_N (HMM E-Value=0.01) 28 5.9
SB_51222| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.8
SB_15720| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.8
SB_13365| Best HMM Match : PKD_channel (HMM E-Value=1.4e-25) 27 7.8
>SB_38066| Best HMM Match : FlaF_arch (HMM E-Value=1.2)
Length = 427
Score = 29.9 bits (64), Expect = 1.5
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +1
Query: 403 YETKNFDILTEAFKILYKSNTTNPALLETE 492
Y+ NFDI T A +I ++SNT A+L +
Sbjct: 98 YQVFNFDISTSAVRIKFESNTQTCAILSIQ 127
>SB_45321| Best HMM Match : Shugoshin_N (HMM E-Value=2.4)
Length = 129
Score = 29.9 bits (64), Expect = 1.5
Identities = 24/105 (22%), Positives = 50/105 (47%), Gaps = 2/105 (1%)
Frame = +1
Query: 223 KGIVSDFEVLQSESENYKTQFEIQKQKCESESCPSAEALKKVIDTKNNIIGLVASTLTK- 399
KG+ + + S +N+++Q ++C + A+ L++V + + ++ L AS L K
Sbjct: 11 KGLEREIHLQVSARKNHESQISELDRRCTETTKECAKVLEQVDNVEASV--LSASRLHKK 68
Query: 400 -LYETKNFDILTEAFKILYKSNTTNPALLETEKLSPIAESRACNE 531
+Y ++ L +A K ++ T L+T A+ A N+
Sbjct: 69 FMYTNEHHKCLLKACKEEMEARTQEVISLKTAAAKRAAKDSAVNQ 113
>SB_6220| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0089)
Length = 374
Score = 29.9 bits (64), Expect = 1.5
Identities = 25/88 (28%), Positives = 42/88 (47%)
Frame = +1
Query: 235 SDFEVLQSESENYKTQFEIQKQKCESESCPSAEALKKVIDTKNNIIGLVASTLTKLYETK 414
S E LQS E K + + QK+K ES E LK+ + K++ I + L +L+E +
Sbjct: 93 SRIEELQSRMEKLKRELKRQKEK-ESTLQGEKERLKEQLAQKDSAINKLGVELKELHEIE 151
Query: 415 NFDILTEAFKILYKSNTTNPALLETEKL 498
+ +A ++ + A E +KL
Sbjct: 152 Q-KLDGKAEELAAEKRKATRATSEADKL 178
>SB_29553| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 573
Score = 28.3 bits (60), Expect = 4.5
Identities = 12/44 (27%), Positives = 26/44 (59%)
Frame = +1
Query: 172 TKIQALDSVLQQSFHYLKGIVSDFEVLQSESENYKTQFEIQKQK 303
+K++ ++ L + +H L+ V+ +SEN KT+++ K+K
Sbjct: 468 SKVRVRETELSEKYHELE---KQLRVISEKSENTKTEYDKSKEK 508
>SB_58198| Best HMM Match : Exo_endo_phos (HMM E-Value=0.012)
Length = 816
Score = 27.9 bits (59), Expect = 5.9
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +1
Query: 379 VASTLTKLYETKNFDILTEAFKILYKSN 462
V ST+ K++E FD L +AF +++ +N
Sbjct: 487 VLSTIPKIFERLQFDQLYDAFAMVFSNN 514
>SB_7623| Best HMM Match : SURF6 (HMM E-Value=2.6)
Length = 256
Score = 27.9 bits (59), Expect = 5.9
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +1
Query: 244 EVLQSESENYKTQFEIQKQKCESESCPSAEALKKVIDTKNNII 372
EV + E K + EI+KQ+ ESE E+ +K I+ + I
Sbjct: 107 EVEKERQEEEKRRMEIEKQRMESEKKRILESKQKRIEESKDTI 149
>SB_3609| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 105
Score = 27.9 bits (59), Expect = 5.9
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +1
Query: 379 VASTLTKLYETKNFDILTEAFKILYKSN 462
V ST+ K++E FD L +AF +++ +N
Sbjct: 15 VLSTIPKIFERLQFDQLYDAFAMVFSNN 42
>SB_2434| Best HMM Match : Vicilin_N (HMM E-Value=0.01)
Length = 317
Score = 27.9 bits (59), Expect = 5.9
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +1
Query: 244 EVLQSESENYKTQFEIQKQKCESESCPSAEALKKVIDTKNNII 372
EV + E K + EI+KQ+ ESE E+ +K I+ + I
Sbjct: 225 EVEKERQEEEKRRMEIEKQRMESEKKRILESKQKRIEESKDTI 267
>SB_51222| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2520
Score = 27.5 bits (58), Expect = 7.8
Identities = 18/72 (25%), Positives = 37/72 (51%)
Frame = +1
Query: 193 SVLQQSFHYLKGIVSDFEVLQSESENYKTQFEIQKQKCESESCPSAEALKKVIDTKNNII 372
S L++ +L+ +++ E +N +F+ + ++ E + + E LKK +D +N I
Sbjct: 799 SELEKLRAHLESDINEKEKEIERKDNALKEFQEKNKELECQLAATGE-LKKTVDELSNSI 857
Query: 373 GLVASTLTKLYE 408
L +TK+ E
Sbjct: 858 TLRDEKITKIKE 869
>SB_15720| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1277
Score = 27.5 bits (58), Expect = 7.8
Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Frame = -1
Query: 313 HFHTFV-FEFQTEFCNSPIHFG 251
H + FV F+FQT C SP +FG
Sbjct: 308 HMNDFVSFKFQTPLCWSPTYFG 329
>SB_13365| Best HMM Match : PKD_channel (HMM E-Value=1.4e-25)
Length = 2146
Score = 27.5 bits (58), Expect = 7.8
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Frame = -2
Query: 528 ITSS*FCYWTQFL---SFKQCWIGCIGFV*YFKCFCEYV 421
+TS YW L S + CW+G + + CFC ++
Sbjct: 1134 VTSGTCMYWDVLLQRWSSRGCWLGSNSSLTHIHCFCNHL 1172
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.317 0.131 0.359
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,689,582
Number of Sequences: 59808
Number of extensions: 205920
Number of successful extensions: 746
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1288581898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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