Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10m11f
(556 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z98050-1|CAI21070.1| 2717|Homo sapiens human immunodeficiency vi... 31 2.1
X51435-1|CAA35798.1| 2717|Homo sapiens protein ( Human PRDII-BF1... 31 2.1
AL391828-1|CAH73909.1| 2717|Homo sapiens human immunodeficiency ... 31 2.1
AL157373-1|CAH73982.1| 2717|Homo sapiens human immunodeficiency ... 31 2.1
AL137221-1|CAI14768.1| 2717|Homo sapiens human immunodeficiency ... 31 2.1
M63488-1|AAA36584.1| 616|Homo sapiens replication protein A, 70... 30 4.7
BC018126-1|AAH18126.1| 616|Homo sapiens replication protein A1,... 30 4.7
AY599563-1|AAS94324.1| 616|Homo sapiens replication protein A1,... 30 4.7
AB209732-1|BAD92969.1| 630|Homo sapiens replication protein A1,... 30 4.7
>Z98050-1|CAI21070.1| 2717|Homo sapiens human immunodeficiency virus
type I enhancer binding protein 1 protein.
Length = 2717
Score = 31.5 bits (68), Expect = 2.1
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Frame = +1
Query: 313 ESCPSAEALKKVIDTKNNIIGLVASTLTKLYETKNFDILTEAF--KILYKSNTTNPALLE 486
E C S+ K + I T + Y FD+L +A ++ S +P ++
Sbjct: 161 EQCDSSSLSSKTRTDNSECISSHCGTTSPSYTNTAFDVLLKAMEPELSTLSQKGSPCAIK 220
Query: 487 TEKLSPIAESRACNEKLREDSLN 555
TEKL P +R+ KL+ S++
Sbjct: 221 TEKLRPNKTARS-PPKLKNSSMD 242
>X51435-1|CAA35798.1| 2717|Homo sapiens protein ( Human PRDII-BF1
gene for a DNA-binding protein. ).
Length = 2717
Score = 31.5 bits (68), Expect = 2.1
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Frame = +1
Query: 313 ESCPSAEALKKVIDTKNNIIGLVASTLTKLYETKNFDILTEAF--KILYKSNTTNPALLE 486
E C S+ K + I T + Y FD+L +A ++ S +P ++
Sbjct: 161 EQCDSSSLSSKTRTDNSECISSHCGTTSPSYTNTAFDVLLKAMEPELSTLSQKGSPCAIK 220
Query: 487 TEKLSPIAESRACNEKLREDSLN 555
TEKL P +R+ KL+ S++
Sbjct: 221 TEKLRPNKTARS-PPKLKNSSMD 242
>AL391828-1|CAH73909.1| 2717|Homo sapiens human immunodeficiency
virus type I enhancer binding protein 1 protein.
Length = 2717
Score = 31.5 bits (68), Expect = 2.1
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Frame = +1
Query: 313 ESCPSAEALKKVIDTKNNIIGLVASTLTKLYETKNFDILTEAF--KILYKSNTTNPALLE 486
E C S+ K + I T + Y FD+L +A ++ S +P ++
Sbjct: 161 EQCDSSSLSSKTRTDNSECISSHCGTTSPSYTNTAFDVLLKAMEPELSTLSQKGSPCAIK 220
Query: 487 TEKLSPIAESRACNEKLREDSLN 555
TEKL P +R+ KL+ S++
Sbjct: 221 TEKLRPNKTARS-PPKLKNSSMD 242
>AL157373-1|CAH73982.1| 2717|Homo sapiens human immunodeficiency
virus type I enhancer binding protein 1 protein.
Length = 2717
Score = 31.5 bits (68), Expect = 2.1
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Frame = +1
Query: 313 ESCPSAEALKKVIDTKNNIIGLVASTLTKLYETKNFDILTEAF--KILYKSNTTNPALLE 486
E C S+ K + I T + Y FD+L +A ++ S +P ++
Sbjct: 161 EQCDSSSLSSKTRTDNSECISSHCGTTSPSYTNTAFDVLLKAMEPELSTLSQKGSPCAIK 220
Query: 487 TEKLSPIAESRACNEKLREDSLN 555
TEKL P +R+ KL+ S++
Sbjct: 221 TEKLRPNKTARS-PPKLKNSSMD 242
>AL137221-1|CAI14768.1| 2717|Homo sapiens human immunodeficiency
virus type I enhancer binding protein 1 protein.
Length = 2717
Score = 31.5 bits (68), Expect = 2.1
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Frame = +1
Query: 313 ESCPSAEALKKVIDTKNNIIGLVASTLTKLYETKNFDILTEAF--KILYKSNTTNPALLE 486
E C S+ K + I T + Y FD+L +A ++ S +P ++
Sbjct: 161 EQCDSSSLSSKTRTDNSECISSHCGTTSPSYTNTAFDVLLKAMEPELSTLSQKGSPCAIK 220
Query: 487 TEKLSPIAESRACNEKLREDSLN 555
TEKL P +R+ KL+ S++
Sbjct: 221 TEKLRPNKTARS-PPKLKNSSMD 242
>M63488-1|AAA36584.1| 616|Homo sapiens replication protein A,
70-kDa subunit protein.
Length = 616
Score = 30.3 bits (65), Expect = 4.7
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = +1
Query: 289 IQKQKCESESCPSAEALKKVIDTKNNI 369
++K+ C ++CP+ + KKVID +N +
Sbjct: 471 LRKENCMYQACPTQDCNKKVIDQQNGL 497
>BC018126-1|AAH18126.1| 616|Homo sapiens replication protein A1,
70kDa protein.
Length = 616
Score = 30.3 bits (65), Expect = 4.7
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = +1
Query: 289 IQKQKCESESCPSAEALKKVIDTKNNI 369
++K+ C ++CP+ + KKVID +N +
Sbjct: 471 LRKENCMYQACPTQDCNKKVIDQQNGL 497
>AY599563-1|AAS94324.1| 616|Homo sapiens replication protein A1,
70kDa protein.
Length = 616
Score = 30.3 bits (65), Expect = 4.7
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = +1
Query: 289 IQKQKCESESCPSAEALKKVIDTKNNI 369
++K+ C ++CP+ + KKVID +N +
Sbjct: 471 LRKENCMYQACPTQDCNKKVIDQQNGL 497
>AB209732-1|BAD92969.1| 630|Homo sapiens replication protein A1,
70kDa variant protein.
Length = 630
Score = 30.3 bits (65), Expect = 4.7
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = +1
Query: 289 IQKQKCESESCPSAEALKKVIDTKNNI 369
++K+ C ++CP+ + KKVID +N +
Sbjct: 485 LRKENCMYQACPTQDCNKKVIDQQNGL 511
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.317 0.131 0.359
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 59,266,178
Number of Sequences: 237096
Number of extensions: 957009
Number of successful extensions: 2497
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2497
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5533942988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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