Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10m11f
         (556 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    28   0.073
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                22   4.8  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   8.4  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    21   8.4  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 27.9 bits (59), Expect = 0.073
 Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 2/89 (2%)
 Frame = -1

Query: 472  DWLYWICIVF*MLL*VCQSF--LFHIVLLMLMQLIR*YCFLYLLLFSMLQH*DRIHFHTF 299
            DW +W    F  L+ V   F  +     L+L+ L       Y +  S   H  +IH    
Sbjct: 861  DWRHW---KFPNLVEVLDEFPSVRPFAPLLLLHLTPLQPRFYSISSSPDVHQGQIHLTVA 917

Query: 298  VFEFQTEFCNSPIHFGVLQNLTQYP*DNE 212
            V +++T+    PIH+GV  N  +   D E
Sbjct: 918  VVQYKTQDGFGPIHYGVCSNYLREISDGE 946


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +1

Query: 439 FKILYKSNTTNPALLETEKLSPIAES 516
           +K LYK       +++TEK S +  S
Sbjct: 82  YKALYKGEQVAAKIIQTEKYSNMLNS 107


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 7/18 (38%), Positives = 9/18 (50%)
 Frame = -2

Query: 504 WTQFLSFKQCWIGCIGFV 451
           W Q+      W G +GFV
Sbjct: 41  WYQYPPLNPMWHGILGFV 58


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 7/18 (38%), Positives = 9/18 (50%)
 Frame = -2

Query: 504 WTQFLSFKQCWIGCIGFV 451
           W Q+      W G +GFV
Sbjct: 7   WYQYPPLNPMWHGILGFV 24


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.317    0.131    0.359 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,625
Number of Sequences: 438
Number of extensions: 1962
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15949830
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)