Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10m11f
         (556 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g10180.1 68416.m01219 kinesin motor protein-related similar t...    29   2.1  
At1g02580.1 68414.m00209 maternal embryogenesis control protein ...    29   2.1  
At2g15760.1 68415.m01804 calmodulin-binding protein similar to A...    29   2.8  
At4g02600.1 68417.m00354 seven transmembrane MLO family protein ...    28   3.6  
At3g60160.1 68416.m06717 ABC transporter family protein similar ...    28   3.6  
At1g70650.1 68414.m08145 zinc finger (Ran-binding) family protei...    28   4.8  
At5g43080.1 68418.m05259 cyclin, putative similar to A-type cycl...    27   8.4  
At3g51770.1 68416.m05677 tetratricopeptide repeat (TPR)-containi...    27   8.4  

>At3g10180.1 68416.m01219 kinesin motor protein-related similar to
           centromere protein E GB:4502781 [Homo sapiens]
          Length = 1348

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +1

Query: 196 VLQQSFHYLKGIVSDFEVLQSESENYKTQFE 288
           V+ ++F+ L  + ++ EVL+SE + YK   E
Sbjct: 665 VINENFNSLVNVATEIEVLESEFQKYKASVE 695


>At1g02580.1 68414.m00209 maternal embryogenesis control protein /
           MEDEA (MEA) nearly identical to MEDEA GB:AAC39446
           GI:3089625 from [Arabidopsis thaliana]; contains Pfam
           profile PF00856: SET domain
          Length = 689

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 5/98 (5%)
 Frame = +1

Query: 190 DSVL-QQSFHYLKGIVSDFEVLQSESENYKTQFEIQKQKCESESCPSAEALKKVIDTKNN 366
           DSV+ ++  +YL G   +    + E +  + + EI+K+KCE      +E + + I T   
Sbjct: 152 DSVIGKRQIYYLNGEALELSSEEDEEDEEEDEEEIKKEKCE-----FSEDVDRFIWTVGQ 206

Query: 367 IIGL----VASTLTKLYETKNFDILTEAFKILYKSNTT 468
             GL    V   L K  E    DIL    ++  K++ T
Sbjct: 207 DYGLDDLVVRRALAKYLEVDVSDILERYNELKLKNDGT 244


>At2g15760.1 68415.m01804 calmodulin-binding protein similar to
           AR781 GI:1669593 from [Arabidopsis thaliana]; AR781
           complements pheromone receptor deficient mutant of
           Shizosaccharomyces pombe
          Length = 315

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -2

Query: 495 FLSFKQCWIGCIGF 454
           FL +KQ W+GC+GF
Sbjct: 284 FLPYKQGWLGCLGF 297


>At4g02600.1 68417.m00354 seven transmembrane MLO family protein /
           MLO-like protein 1 (MLO1) identical to MLO-like protein
           1 (MLO protein homolog 1) [Arabidopsis thaliana]
           SWISS-PROT:O49621; similar to MLO protein
           SWISS-PROT:P93766, NCBI_gi:1877221 [Hordeum
           vulgare][Barley]
          Length = 526

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -1

Query: 547 NPLLTFHYKLLILLLDSISQFQAMLDWLYWICIVF*MLL 431
           NP L FH  ++  L D   Q    + W  WI +V  +LL
Sbjct: 268 NPKLNFHKYMMRALEDDFKQVVG-ISWYLWIFVVIFLLL 305


>At3g60160.1 68416.m06717 ABC transporter family protein similar to
           ATP-binding cassette transporter MRP8 GI:18031899 from
           [Arabidopsis thaliana]
          Length = 1490

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = -1

Query: 427 VCQSFLFHIVLLMLMQLIR*YCFLYLLLF 341
           V QSF ++I LL  + ++  +CF+ LLLF
Sbjct: 76  VKQSFSYNISLLCSVSILGTHCFILLLLF 104


>At1g70650.1 68414.m08145 zinc finger (Ran-binding) family protein
           contains Pfam domain, PF00641: Zn-finger in Ran binding
           protein and others
          Length = 466

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +1

Query: 490 EKLSPIAESRACNEKLREDSL 552
           + +SP  E+RAC  KL EDS+
Sbjct: 172 DSISPTVENRACQTKLVEDSV 192


>At5g43080.1 68418.m05259 cyclin, putative similar to A-type cyclins
           from [Nicotiana tabacum] GI:1064931, [Catharanthus
           roseus] GI:2190259; contains Pfam profiles PF00134:
           Cyclin, N-terminal domain, PF02984: Cyclin, C-terminal
           domain
          Length = 355

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +1

Query: 274 KTQFEIQKQKCESESCPSAEALKKVIDTKNNIIGLVASTLTKLYE 408
           K++    KQK +S S P+ E L   IDT+++   +    +T ++E
Sbjct: 49  KSRKATTKQKKKSVSIPTIETLNSDIDTRSDDPQMCGPYVTSIFE 93


>At3g51770.1 68416.m05677 tetratricopeptide repeat (TPR)-containing
            protein contains Pfam profile PF00515: TPR Domain
          Length = 958

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 27/120 (22%), Positives = 45/120 (37%), Gaps = 4/120 (3%)
 Frame = +1

Query: 199  LQQSFH--YLKGIVSDFEVLQSESENYKTQFEIQKQKCESESCPSAEALKKV--IDTKNN 366
            +Q+SF   +LK        L  +S NY  Q   +  KC S+     +AL  +  +     
Sbjct: 734  IQRSFEAFFLKAYALADSTLDPDSSNYVIQLLQEALKCPSDGLRKGQALNNLGSVYVDCE 793

Query: 367  IIGLVASTLTKLYETKNFDILTEAFKILYKSNTTNPALLETEKLSPIAESRACNEKLRED 546
             + L A   T     K+        ++ +  N    A  E  KL   A++ A   + R +
Sbjct: 794  KLDLAADCYTNALTIKHTRAHQGLARVYHLKNQRKAAYDEMTKLIEKAQNNASAYEKRSE 853


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.317    0.131    0.359 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,043,861
Number of Sequences: 28952
Number of extensions: 142513
Number of successful extensions: 508
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 508
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1053014392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)