Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10m09f
(576 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U70848-2|AAB09110.4| 313|Caenorhabditis elegans Trypsin-like pr... 50 2e-06
U58751-11|AAB00662.1| 265|Caenorhabditis elegans Trypsin-like p... 41 7e-04
Z78013-9|CAB01420.2| 297|Caenorhabditis elegans Hypothetical pr... 38 0.007
U29380-14|AAA68746.2| 293|Caenorhabditis elegans Trypsin-like p... 37 0.012
Z35719-1|CAA84800.1| 296|Caenorhabditis elegans Hypothetical pr... 29 1.8
AF003384-12|AAB54236.2| 331|Caenorhabditis elegans Trypsin-like... 29 2.4
Z99278-4|CAB16492.1| 871|Caenorhabditis elegans Hypothetical pr... 29 3.1
Z99278-3|CAB16493.1| 867|Caenorhabditis elegans Hypothetical pr... 29 3.1
X70836-1|CAA50184.1| 636|Caenorhabditis elegans Cytoplasmic int... 29 3.1
U56860-4|AAM69100.1| 1128|Caenorhabditis elegans Intermediate fi... 29 3.1
U56860-3|AAM69101.1| 1248|Caenorhabditis elegans Intermediate fi... 29 3.1
AL023844-1|CAA19526.1| 401|Caenorhabditis elegans Hypothetical ... 28 4.1
Z95621-2|CAB09131.1| 330|Caenorhabditis elegans Hypothetical pr... 28 5.5
Z78019-9|CAB01457.1| 330|Caenorhabditis elegans Hypothetical pr... 28 5.5
L15419-1|AAA17726.1| 308|Caenorhabditis elegans col-40 collagen... 27 7.2
AF026211-4|AAB71295.1| 416|Caenorhabditis elegans Collagen prot... 27 7.2
AF003390-3|AAB54272.1| 1308|Caenorhabditis elegans Hypothetical ... 27 7.2
>U70848-2|AAB09110.4| 313|Caenorhabditis elegans Trypsin-like
protease protein 3 protein.
Length = 313
Score = 49.6 bits (113), Expect = 2e-06
Identities = 31/97 (31%), Positives = 50/97 (51%)
Frame = +2
Query: 185 RIVGGSAANAGAHPHLAGLVIALTNGRTSICGASLLTNTRSVTAAHCWRTRRAQARQFTL 364
RI+GG++ + GA+ +A LV NG+ +CGA+++ + VTAAHC + Q R F
Sbjct: 37 RIIGGNSIDDGAN-WMAKLVSYGDNGQGILCGATVIDDFWLVTAAHC--ALQLQTRSFVY 93
Query: 365 ALGTANIFSGGTRVTTSNVQMHGSYNMDTLHNDVAII 475
N + + +H YN T ND+A++
Sbjct: 94 VREPKN--NRERSFSVKEAYIHSGYNNQTADNDIALL 128
>U58751-11|AAB00662.1| 265|Caenorhabditis elegans Trypsin-like
protease protein 2 protein.
Length = 265
Score = 40.7 bits (91), Expect = 7e-04
Identities = 34/125 (27%), Positives = 51/125 (40%), Gaps = 2/125 (1%)
Frame = +2
Query: 185 RIVGGSAANAGAHPHLAGLVIALTNGRTSICGASLLTNTRSVTAAHCW-RTRRAQARQFT 361
R+VGG GA P A L T CGAS+L T +TAAHC+ R + +
Sbjct: 26 RVVGGFETVPGAFPWTAALRNKATKAHH--CGASILDKTHLITAAHCFEEDERVSSYEVV 83
Query: 362 LALGTANIFSGGTRV-TTSNVQMHGSYNMDTLHNDVAIINHNHVGFTNNIQRINLASGSN 538
+ N G ++ + + Y D +D+AI+ + G N + S
Sbjct: 84 VGDWDNNQTDGNEQIFYLQRIHFYPLYK-DIFSHDIAILEIPYPGIEFNEYAQPICLPSK 142
Query: 539 NFAGT 553
+F T
Sbjct: 143 DFVYT 147
>Z78013-9|CAB01420.2| 297|Caenorhabditis elegans Hypothetical
protein F15B9.5 protein.
Length = 297
Score = 37.5 bits (83), Expect = 0.007
Identities = 16/48 (33%), Positives = 28/48 (58%)
Frame = +2
Query: 182 TRIVGGSAANAGAHPHLAGLVIALTNGRTSICGASLLTNTRSVTAAHC 325
T I+ G +AN+ LA ++ +G T++CG L+ + +T+AHC
Sbjct: 15 TSIINGFSANSFDTLSLASVITRFPDGTTNVCGGVLIAPSIVITSAHC 62
>U29380-14|AAA68746.2| 293|Caenorhabditis elegans Trypsin-like
protease protein 1 protein.
Length = 293
Score = 36.7 bits (81), Expect = 0.012
Identities = 26/87 (29%), Positives = 44/87 (50%)
Frame = +2
Query: 185 RIVGGSAANAGAHPHLAGLVIALTNGRTSICGASLLTNTRSVTAAHCWRTRRAQARQFTL 364
R++GGS ++ + P L+ L + R CG SL+ +TAAHC+ R + +++
Sbjct: 57 RLIGGSESSPHSWPWTVQLLSRLGHHR---CGGSLIDPNFVLTAAHCFAKDR-RPTSYSV 112
Query: 365 ALGTANIFSGGTRVTTSNVQMHGSYNM 445
+G SG T+ V +H YN+
Sbjct: 113 RVGGHRSGSGSPHRVTA-VSIHPWYNI 138
>Z35719-1|CAA84800.1| 296|Caenorhabditis elegans Hypothetical
protein F17C8.2 protein.
Length = 296
Score = 29.5 bits (63), Expect = 1.8
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = -3
Query: 409 GDPGASGEDVSCAKSEGELTSLGSPGPP 326
G+PGA G+D K +GE G PGPP
Sbjct: 201 GEPGAPGKDGE--KGKGEPGPAGPPGPP 226
>AF003384-12|AAB54236.2| 331|Caenorhabditis elegans Trypsin-like
protease protein 5 protein.
Length = 331
Score = 29.1 bits (62), Expect = 2.4
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Frame = +2
Query: 200 SAANAGAHPHLAGLVIAL-TNGRTS----ICGASLLTNTRSVTAAHCWR 331
+A N G HLA + + R ICG +L+T +TAAHC++
Sbjct: 32 AAGNTGNPTHLAPWAVQIRVKARKGDFEVICGGTLITLKHVLTAAHCFQ 80
>Z99278-4|CAB16492.1| 871|Caenorhabditis elegans Hypothetical
protein Y53C12B.3b protein.
Length = 871
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = -2
Query: 257 SSVRSQVQQDGGEHQRWRQNHPQSWYRRSQRLPRRV*DSRPGGY 126
S SQ + DG +HQ + PQ Y + + + + P GY
Sbjct: 351 SKRNSQNEDDGQQHQHQNEQQPQQGYHQQDFVSNPLWNQMPVGY 394
>Z99278-3|CAB16493.1| 867|Caenorhabditis elegans Hypothetical
protein Y53C12B.3a protein.
Length = 867
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = -2
Query: 257 SSVRSQVQQDGGEHQRWRQNHPQSWYRRSQRLPRRV*DSRPGGY 126
S SQ + DG +HQ + PQ Y + + + + P GY
Sbjct: 351 SKRNSQNEDDGQQHQHQNEQQPQQGYHQQDFVSNPLWNQMPVGY 394
>X70836-1|CAA50184.1| 636|Caenorhabditis elegans Cytoplasmic
intermediate filament(IF) protein protein.
Length = 636
Score = 28.7 bits (61), Expect = 3.1
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 455 HNDVAIINHNHVGFTNNIQRINLASGSNN 541
HN++A+ N + ++ +QRINL NN
Sbjct: 203 HNEIALKNERSLNVSDLLQRINLLQTENN 231
>U56860-4|AAM69100.1| 1128|Caenorhabditis elegans Intermediate
filament, c protein2, isoform a protein.
Length = 1128
Score = 28.7 bits (61), Expect = 3.1
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 455 HNDVAIINHNHVGFTNNIQRINLASGSNN 541
HN++A+ N + ++ +QRINL NN
Sbjct: 829 HNEIALKNERSLNVSDLLQRINLLQTENN 857
>U56860-3|AAM69101.1| 1248|Caenorhabditis elegans Intermediate
filament, c protein2, isoform b protein.
Length = 1248
Score = 28.7 bits (61), Expect = 3.1
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 455 HNDVAIINHNHVGFTNNIQRINLASGSNN 541
HN++A+ N + ++ +QRINL NN
Sbjct: 829 HNEIALKNERSLNVSDLLQRINLLQTENN 857
>AL023844-1|CAA19526.1| 401|Caenorhabditis elegans Hypothetical
protein Y48A6B.1 protein.
Length = 401
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -3
Query: 181 TVEVSGFLGASKTLGPGDTDLVVVVKFDGLF 89
TV V + ++ LG +TDL+ KFDGL+
Sbjct: 171 TVMVHKIVPVTEVLGMNETDLLEGAKFDGLY 201
>Z95621-2|CAB09131.1| 330|Caenorhabditis elegans Hypothetical
protein ZK863.2 protein.
Length = 330
Score = 27.9 bits (59), Expect = 5.5
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = -3
Query: 409 GDPGASGEDVSCAKSEGELTSLGSPGPP 326
G+PGA G+ A S GE G PGPP
Sbjct: 122 GNPGADGD----AGSPGEAGGAGPPGPP 145
>Z78019-9|CAB01457.1| 330|Caenorhabditis elegans Hypothetical
protein ZK863.2 protein.
Length = 330
Score = 27.9 bits (59), Expect = 5.5
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = -3
Query: 409 GDPGASGEDVSCAKSEGELTSLGSPGPP 326
G+PGA G+ A S GE G PGPP
Sbjct: 122 GNPGADGD----AGSPGEAGGAGPPGPP 145
>L15419-1|AAA17726.1| 308|Caenorhabditis elegans col-40 collagen
protein.
Length = 308
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -3
Query: 409 GDPGASGEDVSCAKSEGELTSLGSPGPP 326
G+PGA G+ + G + G PGPP
Sbjct: 219 GNPGAPGQVTETPGTPGPAGAAGPPGPP 246
>AF026211-4|AAB71295.1| 416|Caenorhabditis elegans Collagen protein
40 protein.
Length = 416
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -3
Query: 409 GDPGASGEDVSCAKSEGELTSLGSPGPP 326
G+PGA G+ + G + G PGPP
Sbjct: 229 GNPGAPGQVTETPGTPGPAGAAGPPGPP 256
>AF003390-3|AAB54272.1| 1308|Caenorhabditis elegans Hypothetical
protein R155.2 protein.
Length = 1308
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +2
Query: 425 MHGSYNMDTLHNDVAIINHNHVGFTNNIQRIN 520
+H S N TL N I+N F ++Q+IN
Sbjct: 501 LHDSMNQHTLDNMSQIVNVTDAKFLESVQKIN 532
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,546,039
Number of Sequences: 27780
Number of extensions: 206322
Number of successful extensions: 904
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 902
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -