Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10m06f
         (546 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like p...    63   1e-10
U70848-2|AAB09110.4|  313|Caenorhabditis elegans Trypsin-like pr...    43   2e-04
U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like p...    40   0.001
AF039047-13|AAM15587.1|  402|Caenorhabditis elegans Coexpressed ...    31   0.72 
Z74473-5|CAI79195.1|  245|Caenorhabditis elegans Hypothetical pr...    29   1.7  
Z81044-11|CAB02809.2|  476|Caenorhabditis elegans Hypothetical p...    29   2.9  
AF022968-5|AAB69885.2| 1080|Caenorhabditis elegans Adenylyl cycl...    29   2.9  
U97408-1|AAB93344.2|  360|Caenorhabditis elegans Trypsin-like pr...    28   5.0  
AF003134-1|AAB54144.1|  522|Caenorhabditis elegans Trypsin-like ...    28   5.0  
U50313-1|AAY86229.1|  923|Caenorhabditis elegans Inositol 1,4,5-...    27   8.8  
AL032653-6|CAA21716.1|  152|Caenorhabditis elegans Hypothetical ...    27   8.8  
AF016452-4|AAB66015.1|  539|Caenorhabditis elegans Hypothetical ...    27   8.8  
AF003384-12|AAB54236.2|  331|Caenorhabditis elegans Trypsin-like...    27   8.8  
AC024794-1|AAK68497.1|  994|Caenorhabditis elegans Hypothetical ...    27   8.8  

>U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like
           protease protein 1 protein.
          Length = 293

 Score = 63.3 bits (147), Expect = 1e-10
 Identities = 47/156 (30%), Positives = 77/156 (49%), Gaps = 3/156 (1%)
 Frame = +3

Query: 81  TNPQRIIGGSTTNINQYPGIAALLYTWNWNQWWQSCGGNILNQRSILSAAHCPYGD-ATG 257
           T   R+IGGS ++ + +P    LL     ++    CGG++++   +L+AAHC   D    
Sbjct: 53  TLDHRLIGGSESSPHSWPWTVQLLSRLGHHR----CGGSLIDPNFVLTAAHCFAKDRRPT 108

Query: 258 RWRIRVGSTFANSGGVVHNVNRIIIHPNYNRRTADS-DLCILRSNSNIAYNNNVRPINIA 434
            + +RVG   + SG   H V  + IHP YN     S D  I+R +  +  +   RPI + 
Sbjct: 109 SYSVRVGGHRSGSGS-PHRVTAVSIHPWYNIGFPSSYDFAIMRIHPPVNTSTTARPICL- 166

Query: 435 GANYNLGDNQVVWAAGWGATSLGGS-NSEQLRHVQV 539
             +    +N++    GWG+T  G S ++  LR + V
Sbjct: 167 -PSLPAVENRLCVVTGWGSTIEGSSLSAPTLREIHV 201


>U70848-2|AAB09110.4|  313|Caenorhabditis elegans Trypsin-like
           protease protein 3 protein.
          Length = 313

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 32/111 (28%), Positives = 57/111 (51%)
 Frame = +3

Query: 93  RIIGGSTTNINQYPGIAALLYTWNWNQWWQSCGGNILNQRSILSAAHCPYGDATGRWRIR 272
           RIIGG++  I+      A L ++  N     CG  +++   +++AAHC     T R  + 
Sbjct: 37  RIIGGNS--IDDGANWMAKLVSYGDNGQGILCGATVIDDFWLVTAAHCALQLQT-RSFVY 93

Query: 273 VGSTFANSGGVVHNVNRIIIHPNYNRRTADSDLCILRSNSNIAYNNNVRPI 425
           V     N+     +V    IH  YN +TAD+D+ +LR +S+++    ++P+
Sbjct: 94  VREP-KNNRERSFSVKEAYIHSGYNNQTADNDIALLRISSDLS-KLGIKPV 142


>U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like
           protease protein 2 protein.
          Length = 265

 Score = 39.9 bits (89), Expect = 0.001
 Identities = 34/141 (24%), Positives = 61/141 (43%), Gaps = 5/141 (3%)
 Frame = +3

Query: 93  RIIGGSTTNINQYPGIAALLYTWNWNQWWQSCGGNILNQRSILSAAHC-PYGDATGRWRI 269
           R++GG  T    +P  AAL    N       CG +IL++  +++AAHC    +    + +
Sbjct: 26  RVVGGFETVPGAFPWTAALR---NKATKAHHCGASILDKTHLITAAHCFEEDERVSSYEV 82

Query: 270 RVG---STFANSGGVVHNVNRIIIHPNYNRRTADSDLCILR-SNSNIAYNNNVRPINIAG 437
            VG   +   +    +  + RI  +P Y +     D+ IL      I +N   +PI +  
Sbjct: 83  VVGDWDNNQTDGNEQIFYLQRIHFYPLY-KDIFSHDIAILEIPYPGIEFNEYAQPICLPS 141

Query: 438 ANYNLGDNQVVWAAGWGATSL 500
            ++     +    +GWG+  L
Sbjct: 142 KDFVYTPGRQCVVSGWGSMGL 162


>AF039047-13|AAM15587.1|  402|Caenorhabditis elegans Coexpressed
           with polycystins protein4 protein.
          Length = 402

 Score = 30.7 bits (66), Expect = 0.72
 Identities = 18/60 (30%), Positives = 29/60 (48%)
 Frame = -2

Query: 365 TVSSTSVIVGMNDNSVHVMHNTPTVGKGGTNTNTPTACSVTVWTVSGTKDRSLVKDVSTT 186
           T ++T +I G    +V     T TV   GT T  PT  + T   ++GT   ++  + +TT
Sbjct: 205 TTTTTVLINGTTTTTVPTNETTTTVPLNGTTTTVPTNETTTTSPLNGTTTTTVPINGATT 264


>Z74473-5|CAI79195.1|  245|Caenorhabditis elegans Hypothetical
           protein F56H9.6 protein.
          Length = 245

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 27/118 (22%), Positives = 41/118 (34%), Gaps = 3/118 (2%)
 Frame = -2

Query: 437 TSNINRTNVVVISYVGITA*DAEVTVSSTSVIVGMNDNSVHVMHNTPTVGKGGTNTNTPT 258
           T++   T     +   IT    EVT ++  V       +      T T     T T TPT
Sbjct: 29  TADPTTTTTEATTTTEITTTTEEVTTTTEPVTTTTTPTTTSTTSTTTTTTPTTTTTTTPT 88

Query: 257 ACSVTVWTVSGTKDRSLVKDVSTTRXXXXXXXPCIQQSSYTGI---LVNVGRGATNNP 93
             + T  T + T   +     +TT        P    ++        V++G G  NNP
Sbjct: 89  TTTSTTSTTTTTTPTTTTSTTTTTTTTTTTATPTTTTTTMPPCNPNAVSLGMGDANNP 146


>Z81044-11|CAB02809.2|  476|Caenorhabditis elegans Hypothetical
           protein C30H6.4 protein.
          Length = 476

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 25/104 (24%), Positives = 42/104 (40%), Gaps = 2/104 (1%)
 Frame = -2

Query: 500 ERCSTPTSSPNNLVITKIVIGTSNINRTNVV--VISYVGITA*DAEVTVSSTSVIVGMND 327
           E     T++P     T I   TS+   T+    V++   +T+     T +ST        
Sbjct: 256 ETTKPTTTTPTTTTTTTIPSTTSSTTSTSTTTSVVTTTTVTSTTEPTTSTSTPT------ 309

Query: 326 NSVHVMHNTPTVGKGGTNTNTPTACSVTVWTVSGTKDRSLVKDV 195
            +  +   TP+     T T+T T  S +  T+S TK  +   D+
Sbjct: 310 TTTTMQTTTPSTTSTPTTTSTTTTTSASTTTISTTKPPTTQIDI 353


>AF022968-5|AAB69885.2| 1080|Caenorhabditis elegans Adenylyl cyclase
            protein 2 protein.
          Length = 1080

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +3

Query: 345  NRRTADSDLCILRSNSNIAYNNNVRPINIAGANYNL 452
            N   AD D   L   ++  YNNN+R  N+A  N NL
Sbjct: 913  NESEADYDDIYLEKQNSGKYNNNIRHGNMAFRNANL 948


>U97408-1|AAB93344.2|  360|Caenorhabditis elegans Trypsin-like
           protease protein 6 protein.
          Length = 360

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 120 INQYPGIAALLYTWNWNQWWQSCGGNILNQRSILSAAHC 236
           IN Y  +  +  TW+     + C G + + R IL+A HC
Sbjct: 58  INTYTNVKNIDETWS-----KHCSGTLTSPRHILTATHC 91


>AF003134-1|AAB54144.1|  522|Caenorhabditis elegans Trypsin-like
           protease protein 7 protein.
          Length = 522

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +3

Query: 183 SCGGNILNQRSILSAAHCPYG-DATGRWRIRVGSTFANS 296
           +C G I++ R IL A HC  G +  G W + +  TF  S
Sbjct: 192 TCTGTIVSPRHILIATHCFAGQNRDGSWNL-IEDTFDRS 229


>U50313-1|AAY86229.1|  923|Caenorhabditis elegans Inositol
           1,4,5-trisphosphate receptorinteracting protein protein
           1, isoform a protein.
          Length = 923

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -2

Query: 359 SSTSVIVGMNDNSVHVMHNTPTVGKGGTNTNTPTACSVTVWTV 231
           + TSVI G +   + V+ NTP+V     N NTP   S  ++ +
Sbjct: 869 NGTSVIRGKDGQVLRVIRNTPSV---SFNLNTPLTASKKMYFI 908


>AL032653-6|CAA21716.1|  152|Caenorhabditis elegans Hypothetical
           protein Y54E5B.4 protein.
          Length = 152

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +2

Query: 74  CSYQPTKDYWWLHD 115
           CS  P+K  WW HD
Sbjct: 136 CSKNPSKTRWWFHD 149


>AF016452-4|AAB66015.1|  539|Caenorhabditis elegans Hypothetical
           protein T05H4.9 protein.
          Length = 539

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -1

Query: 408 CYKLCWNYCVRCRGHCQQYVCYS 340
           CY L + +C RC+    +Y+C+S
Sbjct: 497 CYNLAFIFCARCK----EYICFS 515


>AF003384-12|AAB54236.2|  331|Caenorhabditis elegans Trypsin-like
           protease protein 5 protein.
          Length = 331

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +3

Query: 186 CGGNILNQRSILSAAHC 236
           CGG ++  + +L+AAHC
Sbjct: 62  CGGTLITLKHVLTAAHC 78


>AC024794-1|AAK68497.1|  994|Caenorhabditis elegans Hypothetical
           protein Y48G1BM.5 protein.
          Length = 994

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -2

Query: 302 TPTVGKGGTNTNTPTACSVTVWTVSGT 222
           T    + G  T T  +CS T+WT + T
Sbjct: 601 TTRTSRTGVPTTTSRSCSTTIWTTATT 627


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,056,641
Number of Sequences: 27780
Number of extensions: 296908
Number of successful extensions: 879
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)