Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10m06f
         (546 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g48020.2 68415.m06011 sugar transporter, putative similar to ...    28   3.5  
At2g48020.1 68415.m06010 sugar transporter, putative similar to ...    28   3.5  
At3g18080.1 68416.m02299 glycosyl hydrolase family 1 protein con...    28   4.7  
At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing ...    27   8.2  
At3g10240.1 68416.m01225 F-box protein-related contains weak Pfa...    27   8.2  
At1g05610.1 68414.m00581 glucose-1-phosphate adenylyltransferase...    27   8.2  

>At2g48020.2 68415.m06011 sugar transporter, putative similar to
           ERD6 protein {Arabidopsis thaliana} GI:3123712,
           sugar-porter family proteins 1 and 2 [Arabidopsis
           thaliana] GI:14585699, GI:14585701; contains Pfam
           profile PF00083: major facilitator superfamily protein
          Length = 463

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +3

Query: 78  PTNPQRIIGGSTTNINQYPGIAALLYTWNWNQWWQSCG 191
           P N + + GG  T +N + G  A+ YT+N+   W S G
Sbjct: 390 PINIKGVAGGMATLVNWF-GAWAVSYTFNFLMSWSSYG 426


>At2g48020.1 68415.m06010 sugar transporter, putative similar to
           ERD6 protein {Arabidopsis thaliana} GI:3123712,
           sugar-porter family proteins 1 and 2 [Arabidopsis
           thaliana] GI:14585699, GI:14585701; contains Pfam
           profile PF00083: major facilitator superfamily protein
          Length = 463

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +3

Query: 78  PTNPQRIIGGSTTNINQYPGIAALLYTWNWNQWWQSCG 191
           P N + + GG  T +N + G  A+ YT+N+   W S G
Sbjct: 390 PINIKGVAGGMATLVNWF-GAWAVSYTFNFLMSWSSYG 426


>At3g18080.1 68416.m02299 glycosyl hydrolase family 1 protein
           contains Pfam PF00232 : Glycosyl hydrolase family 1
           domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
           similar to beta-glucosidase BGQ60 precursor GB:A57512
           [Hordeum vulgare]; similar to beta-mannosidase enzyme
           (GI:17226270) [Lycopersicon esculentum]
          Length = 512

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -1

Query: 489 HPNQQPKQLGYHQDCN 442
           HP  +PK LGY QD N
Sbjct: 356 HPTTKPKDLGYQQDWN 371


>At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing
           protein 
          Length = 710

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
 Frame = +3

Query: 396 IAYNNNVRPINIAGANYNLGDNQVVWAAGWG---ATSLGG 506
           +A NNN    N  G N+  G+N+      WG   A  +GG
Sbjct: 350 VANNNNNNNNNAIGGNFQGGENRGFGRGNWGRGNAQGMGG 389


>At3g10240.1 68416.m01225 F-box protein-related contains weak
           Pfam:PF00646 F-box domain
          Length = 389

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -1

Query: 351 VCYSWDE**FCSRYAQHPHCWQRWNQ-HEYANGL*RHRMD 235
           +C+  +E  F S   QH   ++ WN+ H Y+  + R+ M+
Sbjct: 76  LCFKANEKFFVSSIPQHRQTFETWNKSHSYSQLIDRYHME 115


>At1g05610.1 68414.m00581 glucose-1-phosphate adenylyltransferase,
           putative / ADP-glucose pyrophosphorylase, putative
           (APS2) similar to SP|P52416 from [Vicia faba]; contains
           Pfam profile PF00483: Nucleotidyl transferase; identical
           to cDNA GI:31408039
          Length = 476

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 20/54 (37%), Positives = 27/54 (50%)
 Frame = -2

Query: 497 RCSTPTSSPNNLVITKIVIGTSNINRTNVVVISYVGITA*DAEVTVSSTSVIVG 336
           RC  P SS +  VIT  +IG   I    V+  S VG+    A+  +   S+IVG
Sbjct: 339 RC-LPPSSMSVAVITNSIIGDGCILDKCVIRGSVVGMRTRIADEVIVEDSIIVG 391


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,395,861
Number of Sequences: 28952
Number of extensions: 276581
Number of successful extensions: 807
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 807
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1023490624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)