Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10m03r
         (723 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    26   0.36 
EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2 pr...    24   1.1  
EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1 pr...    24   1.1  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       22   4.4  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    21   7.6  

>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 25.8 bits (54), Expect = 0.36
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -3

Query: 214 RSCNNYWRCQ 185
           +SCN YW+CQ
Sbjct: 168 KSCNRYWQCQ 177


>EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2
           protein.
          Length = 237

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -3

Query: 217 HRSCNNYWRC 188
           H SC+ YW+C
Sbjct: 35  HTSCDKYWKC 44


>EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1
           protein.
          Length = 274

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -3

Query: 217 HRSCNNYWRC 188
           H SC+ YW+C
Sbjct: 35  HTSCDKYWKC 44


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +2

Query: 278 SRASPPEAKDLRTRLKMRISPSAEPTD 358
           S  S  E KD+ T L    SP+ +P D
Sbjct: 116 SPKSEKEEKDMETTLTPCASPNRKPDD 142


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +2

Query: 50  TSWATYSRTRLTSAA*SVR*TGIFSRKLLTAGPTSRP 160
           TS  TYS   + ++  SV  T  +   L   G TS+P
Sbjct: 91  TSNPTYSSRSVMTSCSSVPTTASYGSDLYFPGATSQP 127


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,703
Number of Sequences: 336
Number of extensions: 2759
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19259425
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)