Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10m02f
         (670 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g48520.2 68414.m05423 glutamyl-tRNA(Gln) amidotransferase B f...    33   0.13 
At1g48520.3 68414.m05424 glutamyl-tRNA(Gln) amidotransferase B f...    32   0.30 
At1g48520.1 68414.m05425 glutamyl-tRNA(Gln) amidotransferase B f...    32   0.30 
At4g20430.1 68417.m02981 subtilase family protein contains Pfam ...    29   2.8  
At5g24810.1 68418.m02930 ABC1 family protein contains Pfam domai...    29   3.7  
At4g17740.2 68417.m02649 C-terminal processing protease, putativ...    29   3.7  
At5g02350.1 68418.m00158 DC1 domain-containing protein contains ...    28   6.5  
At4g21326.1 68417.m03081 subtilase family protein contains simil...    28   6.5  
At3g49200.1 68416.m05377 hypothetical protein                          28   6.5  
At2g13900.1 68415.m01542 DC1 domain-containing protein contains ...    28   6.5  
At2g45000.1 68415.m05603 expressed protein contains Pfam profile...    27   8.5  
At2g01570.1 68415.m00081 gibberellin response modulator (RGA1) /...    27   8.5  
At1g20400.1 68414.m02544 myosin heavy chain-related                    27   8.5  

>At1g48520.2 68414.m05423 glutamyl-tRNA(Gln) amidotransferase B
           family protein contains Pfam profiles: PF02934 PET112
           family, N terminal region, PF02637 GatB/Yqey domain,
           PF01162 PET112 family, C terminal region
          Length = 475

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 17/71 (23%), Positives = 33/71 (46%)
 Frame = +3

Query: 315 NVIVVDWSSFSLSTYSTAVMAVTGVGSSIATFLKNLKLPLNKVHIVGFNLGAHVAGVTGR 494
           +V V ++    +   +   +A   + S IA +LKN KL +N + +    L   +A +   
Sbjct: 394 DVSVAEYFDAVIGKGAEVKLAANWIMSDIAAYLKNEKLSINDIKLTPQELAELIAAIKDG 453

Query: 495 NLEGKVARITG 527
            + GK+ +  G
Sbjct: 454 TISGKIGKEVG 464


>At1g48520.3 68414.m05424 glutamyl-tRNA(Gln) amidotransferase B
           family protein contains Pfam profiles: PF02934 PET112
           family, N terminal region, PF02637 GatB/Yqey domain,
           PF01162 PET112 family, C terminal region
          Length = 488

 Score = 32.3 bits (70), Expect = 0.30
 Identities = 16/68 (23%), Positives = 32/68 (47%)
 Frame = +3

Query: 315 NVIVVDWSSFSLSTYSTAVMAVTGVGSSIATFLKNLKLPLNKVHIVGFNLGAHVAGVTGR 494
           +V V ++    +   +   +A   + S IA +LKN KL +N + +    L   +A +   
Sbjct: 394 DVSVAEYFDAVIGKGAEVKLAANWIMSDIAAYLKNEKLSINDIKLTPQELAELIAAIKDG 453

Query: 495 NLEGKVAR 518
            + GK+ +
Sbjct: 454 TISGKIGK 461


>At1g48520.1 68414.m05425 glutamyl-tRNA(Gln) amidotransferase B
           family protein contains Pfam profiles: PF02934 PET112
           family, N terminal region, PF02637 GatB/Yqey domain,
           PF01162 PET112 family, C terminal region
          Length = 550

 Score = 32.3 bits (70), Expect = 0.30
 Identities = 16/68 (23%), Positives = 32/68 (47%)
 Frame = +3

Query: 315 NVIVVDWSSFSLSTYSTAVMAVTGVGSSIATFLKNLKLPLNKVHIVGFNLGAHVAGVTGR 494
           +V V ++    +   +   +A   + S IA +LKN KL +N + +    L   +A +   
Sbjct: 394 DVSVAEYFDAVIGKGAEVKLAANWIMSDIAAYLKNEKLSINDIKLTPQELAELIAAIKDG 453

Query: 495 NLEGKVAR 518
            + GK+ +
Sbjct: 454 TISGKIGK 461


>At4g20430.1 68417.m02981 subtilase family protein contains Pfam
            profile: PF00082 subtilase family
          Length = 856

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 29/109 (26%), Positives = 48/109 (44%)
 Frame = +3

Query: 126  YYYSNAQRNSITLTEDHFPTGNDTAARFNNNWDIVVIIHGHSGTATTTINPIVKDAFLTS 305
            Y  +N  RN+ T++       + T ++ NN   +  ++   +G  T T++ I     L  
Sbjct: 739  YTGTNCLRNNATISGSDLNLPSITVSKLNNTRTVQRLMTNIAGNETYTVSLITPFDVL-- 796

Query: 306  GDYNVIVVDWSSFSLSTYSTAVMAVTGVGSSIATFLKNLKLPLNKVHIV 452
               NV    +S  S  T   +V+      SSI++F   +KL  N  HIV
Sbjct: 797  --INVSPTQFSIASGETKLLSVILTAKRNSSISSF-GGIKLLGNAGHIV 842


>At5g24810.1 68418.m02930 ABC1 family protein contains Pfam domain,
           PF03109: ABC1 family
          Length = 1009

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 273 NPIVKDAFLTSGDYNVIVVDWSSFSL 350
           NP + DAF+ +GDY+ +VV    F L
Sbjct: 901 NPRIHDAFMGAGDYSGLVVPDGKFGL 926


>At4g17740.2 68417.m02649 C-terminal processing protease, putative
           similar to C-terminal protease precursor [Spinacia
           oleracea] GI:999435; similar to SP|Q44879| (Bartonella
           bacilliformis)
          Length = 505

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 26/104 (25%), Positives = 48/104 (46%)
 Frame = -1

Query: 664 SMCPIATPKPFLLTPDPSV*ITSTY*ASFVPSRSTLFSQSRAEGSRPVILATLPSKFLPV 485
           S+ PI+  KP  + P+ S+ I+     S+  SRS +   SR+  + P ++    ++FL V
Sbjct: 8   SLSPISFTKPNKINPNFSIQISKASKFSYARSRSNI---SRSNAANPGVVFVC-NRFLCV 63

Query: 484 TPAT*APRLKPTMCTLLSGNLRFFKKVAILDPTPVTAITAVEYV 353
                  +L   +    S N R    VA++    V  ++++  V
Sbjct: 64  IERNDQRKLSGKVMMKSSVNFRQNLSVALVRIVSVLLVSSISVV 107


>At5g02350.1 68418.m00158 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 651

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
 Frame = +2

Query: 233 NNTRSQWHCYDDDQPYC*RRIFNKWR---L*RYRC 328
           NNTRS+  C+  D+  C  ++  KW+      YRC
Sbjct: 614 NNTRSRPFCHHHDEDRCPYKVIFKWQDMTFCSYRC 648


>At4g21326.1 68417.m03081 subtilase family protein contains
           similarity to subtilase; SP1 GI:9957714 from [Oryza
           sativa]
          Length = 690

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 24/86 (27%), Positives = 33/86 (38%)
 Frame = +3

Query: 249 SGTATTTINPIVKDAFLTSGDYNVIVVDWSSFSLSTYSTAVMAVTGVGSSIATFLKNLKL 428
           S  ATTTIN         SGDY   +V    F    Y      +  + SS +     +K+
Sbjct: 357 SALATTTINKAAGLIVARSGDYQSDIVYNQPFIYVDYEVGAKILRYIRSSSS---PTIKI 413

Query: 429 PLNKVHIVGFNLGAHVAGVTGRNLEG 506
              K  +VG  +   V G + R   G
Sbjct: 414 STGKT-LVGRPIATQVCGFSSRGPNG 438


>At3g49200.1 68416.m05377 hypothetical protein
          Length = 507

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
 Frame = +3

Query: 498 LEGKVARITG--LDPSARDWENNVLRLGTNDAQYVEVI---HTDGSGVNKNGLGVA 650
           LE  V+ +T   LD S   WE ++L L T+DA+ V V+   H+ G G++   L +A
Sbjct: 120 LESYVSDLTTIPLDTSKPLWEVHLLDLKTSDAENVAVLRIHHSLGDGMSMMSLVLA 175


>At2g13900.1 68415.m01542 DC1 domain-containing protein contains
           Pfam protein PF03107 DC1 domain
          Length = 661

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 233 NNTRSQWHCYDDDQPYC*RRIFNKWR 310
           NNTRS+  C+  D+  C  ++  KW+
Sbjct: 622 NNTRSRPFCHHHDEDRCPHKVVFKWQ 647


>At2g45000.1 68415.m05603 expressed protein contains Pfam profile:
           PF05064 Nsp1-like C-terminal region
          Length = 739

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = -1

Query: 631 LLTPDPSV*ITSTY*ASFVPSRSTLFSQSRAEGSRPVILATLPSKFLPVTPAT 473
           L +  P+   T+++    VP  ST  S S+ + + P    +LPS      PAT
Sbjct: 451 LASSTPATGSTNSFTGFAVPKTSTPASSSQPQTTSPAFSFSLPSSTSTTAPAT 503


>At2g01570.1 68415.m00081 gibberellin response modulator (RGA1) /
           gibberellin-responsive modulator identical to GB:Y11336,
           member of SCARECROW family
          Length = 587

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 516 RITGLDPSARDWENNVLRLGTNDAQYVEVIHTD 614
           R+TG+ P A D  +++  +G   AQ  E IH +
Sbjct: 354 RLTGIGPPAPDNSDHLHEVGCKLAQLAEAIHVE 386


>At1g20400.1 68414.m02544 myosin heavy chain-related
          Length = 944

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = +3

Query: 93  NLERFGSLNKYYYYSNAQRNSITLTEDHFPTGNDTAAR 206
           N E  GS +  Y          +  +DH P+G D AAR
Sbjct: 517 NTEEVGSYSSRYKRQKTSALKESQEKDHLPSGEDRAAR 554


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,598,843
Number of Sequences: 28952
Number of extensions: 304865
Number of successful extensions: 722
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)