Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10l24r
         (731 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39844| Best HMM Match : LicD (HMM E-Value=8.6e-06)                  31   0.73 
SB_18117| Best HMM Match : rve (HMM E-Value=1.7e-29)                   30   1.7  
SB_27265| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.8  
SB_11032| Best HMM Match : AAA (HMM E-Value=3.5)                       28   9.0  

>SB_39844| Best HMM Match : LicD (HMM E-Value=8.6e-06)
          Length = 280

 Score = 31.5 bits (68), Expect = 0.73
 Identities = 17/34 (50%), Positives = 22/34 (64%)
 Frame = -2

Query: 559 IREAGFDPLDVDRREIVIPPEEDFHALAAFAEDI 458
           +R  G +P D D  +I IP EEDFH L A AE++
Sbjct: 109 VRHQGHNPFDNDI-DIAIP-EEDFHKLQAAAEEL 140


>SB_18117| Best HMM Match : rve (HMM E-Value=1.7e-29)
          Length = 1544

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
 Frame = +2

Query: 224  NSGDDADAYTHFSTNTKVVYGGTSTGASVAFVIEHIKLNTGSTDAS--FNTR*TQD*VET 397
            N  +D D  ++ + +   V  G S G  V   I+   ++ GS+D     ++    D V  
Sbjct: 1313 NGANDGDDVSNGTNDGDDVSNGASDG-DVVVTIDGDDVSDGSSDGDDVSDSSSDGDDVSD 1371

Query: 398  GAKDAKIVSDNDDVA 442
            GA D   VSD DDV+
Sbjct: 1372 GASDGDDVSDGDDVS 1386


>SB_27265| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 142

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = +2

Query: 194 GKVYIETPNRNSGDDADAYTHFSTNTKVVYGGTSTGASVAFVIEHIK 334
           G  ++  P    G    A+T  +T +K  +  +ST A VAF +++++
Sbjct: 42  GFKFVRGPEPYMGSTKSAFTPITTFSKSTFLASSTPAHVAFAMDNLR 88


>SB_11032| Best HMM Match : AAA (HMM E-Value=3.5)
          Length = 111

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 14/56 (25%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
 Frame = -2

Query: 655 TQTFDEQTEINARQERLVTNQVASAIENIRKQIREAGFDPLDVDRREIVIP-PEED 491
           TQ  D + E + R +     Q+     ++ ++ REAGFD +++ + ++++  P++D
Sbjct: 33  TQRTDGEHEASRRIKTEFLVQLVELANDLARRWREAGFDRVEMPQYQVLLSFPQKD 88


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,694,344
Number of Sequences: 59808
Number of extensions: 419545
Number of successful extensions: 994
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 932
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 994
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)