Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10l24r
         (731 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g10730.1 68417.m01753 protein kinase family protein contains ...    32   0.34 
At3g53470.2 68416.m05903 expressed protein ribosomal protein S25...    31   0.79 
At3g53470.1 68416.m05902 expressed protein ribosomal protein S25...    31   0.79 
At5g40740.1 68418.m04944 expressed protein                             29   3.2  
At3g30300.1 68416.m03826 expressed protein contains Pfam PF03138...    28   7.3  
At3g07400.1 68416.m00882 lipase class 3 family protein contains ...    28   7.3  
At3g03540.1 68416.m00355 phosphoesterase family protein similar ...    27   9.7  

>At4g10730.1 68417.m01753 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 708

 Score = 32.3 bits (70), Expect = 0.34
 Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 3/96 (3%)
 Frame = -2

Query: 628 INARQERLVTNQVASAIENIRKQIREA-GFD-PLDVDRREIVIPPEEDFHALAAFAEDIK 455
           IN+  E++   + + +   ++  +R A  F  PL++  R           +   F + I 
Sbjct: 483 INSDSEKVHGYERSESERQLKSSVRRAPSFSGPLNLPNRASANSLSAPIKSSGGFRDSID 542

Query: 454 STGLSNIVIITNNFSILSARLNLVLSLP-RVEASVG 350
               +N+V I   FS+ S  L+L  + P R  ASVG
Sbjct: 543 DKSKANVVQIKGRFSVTSENLDLARASPLRKSASVG 578


>At3g53470.2 68416.m05903 expressed protein ribosomal protein S25,
           cytosolic, Arabidopsis thaliana, PIR:T08568
          Length = 136

 Score = 31.1 bits (67), Expect = 0.79
 Identities = 19/63 (30%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
 Frame = -2

Query: 583 AIENIRKQIREAGFDPLDVDRREIVIPPEEDFHALAAFAEDIKSTGLSNIVIITN-NFSI 407
           A +N +KQ +++ F   +VD+     PP  +F  L+   + IK T  SN+++ T+  F++
Sbjct: 58  AWKNFKKQSKKSLFSQFNVDKYVTWNPPRSEFD-LSEEVDPIKRTERSNLMLWTSPRFTL 116

Query: 406 LSA 398
           + A
Sbjct: 117 VGA 119


>At3g53470.1 68416.m05902 expressed protein ribosomal protein S25,
           cytosolic, Arabidopsis thaliana, PIR:T08568
          Length = 135

 Score = 31.1 bits (67), Expect = 0.79
 Identities = 19/63 (30%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
 Frame = -2

Query: 583 AIENIRKQIREAGFDPLDVDRREIVIPPEEDFHALAAFAEDIKSTGLSNIVIITN-NFSI 407
           A +N +KQ +++ F   +VD+     PP  +F  L+   + IK T  SN+++ T+  F++
Sbjct: 57  AWKNFKKQSKKSLFSQFNVDKYVTWNPPRSEFD-LSEEVDPIKRTERSNLMLWTSPRFTL 115

Query: 406 LSA 398
           + A
Sbjct: 116 VGA 118


>At5g40740.1 68418.m04944 expressed protein
          Length = 741

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -2

Query: 658 STQTFDEQTEINARQERLVTNQVASAIENIRKQIREA 548
           S +   +Q   NAR + L T+  +S + N++K +REA
Sbjct: 554 SEKNSTDQALSNARPDNLPTDTSSSFVHNLKKSVREA 590


>At3g30300.1 68416.m03826 expressed protein contains Pfam PF03138:
           Plant protein family. The function of this family of
           plant proteins is unknown; previously annotated as
           'auxin-independent growth promoter -related'  based on
           similarity to axi 1 protein (GB:X80301) (GI:559920) from
           [Nicotiana tabacum], which, due to scienitific fraud was
           retracted. Retraction in: Schell J. EMBO J 1999 May
           17;18(10):2908. PMID:10400497.
          Length = 677

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
 Frame = -3

Query: 687 LFSPQFWLVPVHKLLMNRRR*THVKSAWSLTRLL-PPSKISESK*EKPDSIHWTLIEEKL 511
           +F  Q  L+P+H +  N    T + ++W L ++    +K ++ K   P SI    +E K 
Sbjct: 363 VFGGQRTLIPLHGMFENVVDRTSLSTSWELAKMYGREAKHNDIKKMTPPSIE---VETKH 419

Query: 510 SSLQRKTSMHLPLSP 466
            SL+       PL P
Sbjct: 420 DSLKSTRQRPQPLPP 434


>At3g07400.1 68416.m00882 lipase class 3 family protein contains
           Pfam profile PF01764: Lipase
          Length = 1003

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -2

Query: 484 ALAAFAEDIKSTGLSNIVIITNNFSI 407
           ALA   +++KS G+  ++ ITN FS+
Sbjct: 818 ALALLLDEVKSLGIPWVLAITNKFSV 843


>At3g03540.1 68416.m00355 phosphoesterase family protein similar to
           SP|P95246 Phospholipase C 2 precursor (EC 3.1.4.3)
           {Mycobacterium tuberculosis}; contains Pfam profile
           PF04185: Phosphoesterase family
          Length = 521

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +3

Query: 111 VCERKLVMVSERSRPNKLTFRSASTPPKVRSILRLLIE-IPETTL 242
           +C+R    V   ++PN+L   SA++     +  +LLIE  P+ T+
Sbjct: 145 ICDRWFASVPGATQPNRLFIHSATSHGTTNNERKLLIEGFPQKTI 189


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,403,905
Number of Sequences: 28952
Number of extensions: 287456
Number of successful extensions: 818
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1604469728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)