Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10l24f
         (653 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   1.9  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          23   2.6  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    23   3.4  
AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex det...    23   3.4  
AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex det...    23   3.4  
AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex det...    23   3.4  
AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex det...    23   3.4  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    23   3.4  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    23   3.4  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    23   3.4  
AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex det...    23   3.4  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    23   3.4  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   4.5  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   4.5  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          22   4.5  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          22   4.5  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          22   4.5  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          22   4.5  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    22   4.5  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   7.9  
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    21   7.9  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   7.9  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    21   7.9  
AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.            21   7.9  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    21   7.9  

>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 13/47 (27%), Positives = 29/47 (61%)
 Frame = +3

Query: 237 EDFHALAAFAEDIKSTGLSNIVIITNNFSILSARLNLVLSLPRVEAS 377
           E+F +L     ++++T ++NI+ + N       + NL LSLP+++++
Sbjct: 489 EEFQSLNNAVGEMEATNVTNILSMDNT------QYNLDLSLPQLDST 529


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 20/55 (36%), Positives = 27/55 (49%)
 Frame = +2

Query: 17  SRHGRHEDFRCSHRNSGLCQYTNF**TDGDKRTSRALGH*PGCFRHRKYQKANKR 181
           S H R+ED R   RNS    Y N    DG++  SR         R R+Y+K ++R
Sbjct: 229 SCHSRYEDLRHEDRNS----YRN----DGERSCSRD--------RSREYKKKDRR 267


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = -3

Query: 423 SLRNRTH*AQHGQHR 379
           SLRNRTH  QH   R
Sbjct: 216 SLRNRTHDFQHTSSR 230


>AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = -3

Query: 423 SLRNRTH*AQHGQHR 379
           SLRNRTH  QH   R
Sbjct: 205 SLRNRTHGFQHTSSR 219


>AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = -3

Query: 423 SLRNRTH*AQHGQHR 379
           SLRNRTH  QH   R
Sbjct: 216 SLRNRTHGFQHTSSR 230


>AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = -3

Query: 423 SLRNRTH*AQHGQHR 379
           SLRNRTH  QH   R
Sbjct: 216 SLRNRTHGFQHTSSR 230


>AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = -3

Query: 423 SLRNRTH*AQHGQHR 379
           SLRNRTH  QH   R
Sbjct: 205 SLRNRTHGFQHTSSR 219


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = -3

Query: 423 SLRNRTH*AQHGQHR 379
           SLRNRTH  QH   R
Sbjct: 216 SLRNRTHGFQHTSSR 230


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = -3

Query: 423 SLRNRTH*AQHGQHR 379
           SLRNRTH  QH   R
Sbjct: 205 SLRNRTHGFQHTSSR 219


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = -3

Query: 423 SLRNRTH*AQHGQHR 379
           SLRNRTH  QH   R
Sbjct: 221 SLRNRTHGFQHTSSR 235


>AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex
           determiner protein.
          Length = 385

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = -3

Query: 423 SLRNRTH*AQHGQHR 379
           SLRNRTH  QH   R
Sbjct: 216 SLRNRTHGFQHTSSR 230


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = -3

Query: 423 SLRNRTH*AQHGQHR 379
           SLRNRTH  QH   R
Sbjct: 216 SLRNRTHGFQHTSSR 230


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -3

Query: 126 SALDVRLSPSVHQKFVYWHK 67
           S +D+    +V QKF++W+K
Sbjct: 67  SNMDMYKDKNVVQKFLWWYK 86


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -3

Query: 126 SALDVRLSPSVHQKFVYWHK 67
           S +D+    +V QKF++W+K
Sbjct: 67  SNMDMYKDKNVVQKFLWWYK 86


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 20/55 (36%), Positives = 27/55 (49%)
 Frame = +2

Query: 17  SRHGRHEDFRCSHRNSGLCQYTNF**TDGDKRTSRALGH*PGCFRHRKYQKANKR 181
           S H R+ED R   RNS    Y N    DG++  SR         R R+Y+K ++R
Sbjct: 229 SCHSRYEDSRHEDRNS----YRN----DGERSCSRD--------RSREYKKKDRR 267


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 20/55 (36%), Positives = 27/55 (49%)
 Frame = +2

Query: 17  SRHGRHEDFRCSHRNSGLCQYTNF**TDGDKRTSRALGH*PGCFRHRKYQKANKR 181
           S H R+ED R   RNS    Y N    DG++  SR         R R+Y+K ++R
Sbjct: 229 SCHSRYEDSRHEDRNS----YRN----DGERSCSRD--------RSREYKKKDRR 267


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 20/55 (36%), Positives = 27/55 (49%)
 Frame = +2

Query: 17  SRHGRHEDFRCSHRNSGLCQYTNF**TDGDKRTSRALGH*PGCFRHRKYQKANKR 181
           S H R+ED R   RNS    Y N    DG++  SR         R R+Y+K ++R
Sbjct: 229 SCHSRYEDSRHEDRNS----YRN----DGERSCSRD--------RSREYKKKDRR 267


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 20/55 (36%), Positives = 27/55 (49%)
 Frame = +2

Query: 17  SRHGRHEDFRCSHRNSGLCQYTNF**TDGDKRTSRALGH*PGCFRHRKYQKANKR 181
           S H R+ED R   RNS    Y N    DG++  SR         R R+Y+K ++R
Sbjct: 229 SCHSRYEDSRHEDRNS----YRN----DGERSCSRD--------RSREYKKKDRR 267


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 20/55 (36%), Positives = 27/55 (49%)
 Frame = +2

Query: 17  SRHGRHEDFRCSHRNSGLCQYTNF**TDGDKRTSRALGH*PGCFRHRKYQKANKR 181
           S H R+ED R   RNS    Y N    DG++  SR         R R+Y+K ++R
Sbjct: 229 SCHSRYEDSRHEDRNS----YRN----DGERSCSRD--------RSREYKKKDRR 267


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -1

Query: 101 RLFIKSLCTGTSQ 63
           R FIK++ TGTSQ
Sbjct: 96  RDFIKNMITGTSQ 108


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -1

Query: 101 RLFIKSLCTGTSQ 63
           R FIK++ TGTSQ
Sbjct: 23  RDFIKNMITGTSQ 35


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = +2

Query: 434 QWTCRHKQP 460
           QWTCR  +P
Sbjct: 486 QWTCRQPEP 494


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -1

Query: 101 RLFIKSLCTGTSQ 63
           R FIK++ TGTSQ
Sbjct: 39  RDFIKNMITGTSQ 51


>AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.
          Length = 50

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = -3

Query: 123 ALDVRLSPSVHQKFVYW 73
           ALD  + P  H   +YW
Sbjct: 24  ALDCSIKPKDHNGSIYW 40


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -1

Query: 101 RLFIKSLCTGTSQ 63
           R FIK++ TGTSQ
Sbjct: 96  RDFIKNMITGTSQ 108


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,030
Number of Sequences: 438
Number of extensions: 3423
Number of successful extensions: 43
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)