Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10l24f
(653 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g10730.1 68417.m01753 protein kinase family protein contains ... 32 0.29
At3g53470.2 68416.m05903 expressed protein ribosomal protein S25... 31 0.67
At3g53470.1 68416.m05902 expressed protein ribosomal protein S25... 31 0.67
At5g40740.1 68418.m04944 expressed protein 29 2.7
At5g10250.1 68418.m01190 phototropic-responsive protein, putativ... 29 2.7
At3g30300.1 68416.m03826 expressed protein contains Pfam PF03138... 28 6.2
At3g07400.1 68416.m00882 lipase class 3 family protein contains ... 28 6.2
At3g03540.1 68416.m00355 phosphoesterase family protein similar ... 27 8.2
>At4g10730.1 68417.m01753 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 708
Score = 32.3 bits (70), Expect = 0.29
Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 3/96 (3%)
Frame = +3
Query: 105 INARQERLVTNQVASAIENIRKQIREA-GFD-PLDVDRREIVIPPEEDFHALAAFAEDIK 278
IN+ E++ + + + ++ +R A F PL++ R + F + I
Sbjct: 483 INSDSEKVHGYERSESERQLKSSVRRAPSFSGPLNLPNRASANSLSAPIKSSGGFRDSID 542
Query: 279 STGLSNIVIITNNFSILSARLNLVLSLP-RVEASVG 383
+N+V I FS+ S L+L + P R ASVG
Sbjct: 543 DKSKANVVQIKGRFSVTSENLDLARASPLRKSASVG 578
>At3g53470.2 68416.m05903 expressed protein ribosomal protein S25,
cytosolic, Arabidopsis thaliana, PIR:T08568
Length = 136
Score = 31.1 bits (67), Expect = 0.67
Identities = 19/63 (30%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Frame = +3
Query: 150 AIENIRKQIREAGFDPLDVDRREIVIPPEEDFHALAAFAEDIKSTGLSNIVIITN-NFSI 326
A +N +KQ +++ F +VD+ PP +F L+ + IK T SN+++ T+ F++
Sbjct: 58 AWKNFKKQSKKSLFSQFNVDKYVTWNPPRSEFD-LSEEVDPIKRTERSNLMLWTSPRFTL 116
Query: 327 LSA 335
+ A
Sbjct: 117 VGA 119
>At3g53470.1 68416.m05902 expressed protein ribosomal protein S25,
cytosolic, Arabidopsis thaliana, PIR:T08568
Length = 135
Score = 31.1 bits (67), Expect = 0.67
Identities = 19/63 (30%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Frame = +3
Query: 150 AIENIRKQIREAGFDPLDVDRREIVIPPEEDFHALAAFAEDIKSTGLSNIVIITN-NFSI 326
A +N +KQ +++ F +VD+ PP +F L+ + IK T SN+++ T+ F++
Sbjct: 57 AWKNFKKQSKKSLFSQFNVDKYVTWNPPRSEFD-LSEEVDPIKRTERSNLMLWTSPRFTL 115
Query: 327 LSA 335
+ A
Sbjct: 116 VGA 118
>At5g40740.1 68418.m04944 expressed protein
Length = 741
Score = 29.1 bits (62), Expect = 2.7
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +3
Query: 75 STQTFDEQTEINARQERLVTNQVASAIENIRKQIREA 185
S + +Q NAR + L T+ +S + N++K +REA
Sbjct: 554 SEKNSTDQALSNARPDNLPTDTSSSFVHNLKKSVREA 590
>At5g10250.1 68418.m01190 phototropic-responsive protein, putative
similar to root phototropism RPT2 [Arabidopsis thaliana]
gi|6959488|gb|AAF33112, a signal transducer of
phototropic response PMID:10662859
Length = 607
Score = 29.1 bits (62), Expect = 2.7
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Frame = -1
Query: 221 NFSSINVQWIESGFSYL-LSDIFDGGSNLVSDQALLTCVYLRLFIKSLCTGTS-QNCGEN 48
+ + +NV + YL +++ F+ G+ + +A +T V L + +L S N
Sbjct: 118 DLNPLNVAPLRCASEYLYMTEEFEAGNLISKTEAFITFVVLASWRDTLTVLRSCTNLSPW 177
Query: 47 NENLHDVRACCKMI 6
ENL VR CC ++
Sbjct: 178 AENLQIVRRCCDLL 191
>At3g30300.1 68416.m03826 expressed protein contains Pfam PF03138:
Plant protein family. The function of this family of
plant proteins is unknown; previously annotated as
'auxin-independent growth promoter -related' based on
similarity to axi 1 protein (GB:X80301) (GI:559920) from
[Nicotiana tabacum], which, due to scienitific fraud was
retracted. Retraction in: Schell J. EMBO J 1999 May
17;18(10):2908. PMID:10400497.
Length = 677
Score = 27.9 bits (59), Expect = 6.2
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Frame = +1
Query: 46 LFSPQFWLVPVHKLLMNRRR*THVKSAWSLTRLL-PPSKISESK*EKPDSIHWTLIEEKL 222
+F Q L+P+H + N T + ++W L ++ +K ++ K P SI +E K
Sbjct: 363 VFGGQRTLIPLHGMFENVVDRTSLSTSWELAKMYGREAKHNDIKKMTPPSIE---VETKH 419
Query: 223 SSLQRKTSMHLPLSP 267
SL+ PL P
Sbjct: 420 DSLKSTRQRPQPLPP 434
>At3g07400.1 68416.m00882 lipase class 3 family protein contains
Pfam profile PF01764: Lipase
Length = 1003
Score = 27.9 bits (59), Expect = 6.2
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +3
Query: 249 ALAAFAEDIKSTGLSNIVIITNNFSI 326
ALA +++KS G+ ++ ITN FS+
Sbjct: 818 ALALLLDEVKSLGIPWVLAITNKFSV 843
>At3g03540.1 68416.m00355 phosphoesterase family protein similar to
SP|P95246 Phospholipase C 2 precursor (EC 3.1.4.3)
{Mycobacterium tuberculosis}; contains Pfam profile
PF04185: Phosphoesterase family
Length = 521
Score = 27.5 bits (58), Expect = 8.2
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = -2
Query: 622 VCERKLVMVSERSRPNKLTFRSASTPPKVRSILRLLIE-IPETTL 491
+C+R V ++PN+L SA++ + +LLIE P+ T+
Sbjct: 145 ICDRWFASVPGATQPNRLFIHSATSHGTTNNERKLLIEGFPQKTI 189
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,232,937
Number of Sequences: 28952
Number of extensions: 258868
Number of successful extensions: 731
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 731
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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