Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10l23r
(672 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g39740.1 68418.m04813 60S ribosomal protein L5 (RPL5B) riboso... 215 2e-56
At3g25520.1 68416.m03173 60S ribosomal protein L5 similar to 60S... 211 3e-55
At2g39320.1 68415.m04827 OTU-like cysteine protease family prote... 37 0.014
At4g40020.1 68417.m05666 hypothetical protein 33 0.13
At4g33300.1 68417.m04737 disease resistance protein (CC-NBS-LRR ... 32 0.30
At5g60960.1 68418.m07647 pentatricopeptide (PPR) repeat-containi... 31 0.92
At4g33690.1 68417.m04785 expressed protein 30 1.2
At2g46790.2 68415.m05838 pseudo-response regulator 9 (APRR9) / t... 29 2.8
At2g46790.1 68415.m05837 pseudo-response regulator 9 (APRR9) / t... 29 2.8
At2g46670.1 68415.m05824 pseudo-response regulator, putative / t... 29 2.8
At1g44910.1 68414.m05146 FF domain-containing protein / WW domai... 29 2.8
At1g17440.2 68414.m02133 transcription initiation factor IID (TF... 29 2.8
At1g17440.1 68414.m02132 transcription initiation factor IID (TF... 29 2.8
At5g22080.1 68418.m02571 DNAJ heat shock N-terminal domain-conta... 29 3.7
At1g73960.1 68414.m08565 expressed protein similar to TATA bindi... 28 4.9
At5g49430.1 68418.m06116 transducin family protein / WD-40 repea... 28 6.5
At3g27025.1 68416.m03381 expressed protein 27 8.6
At1g15290.1 68414.m01830 tetratricopeptide repeat (TPR)-containi... 27 8.6
At1g14480.1 68414.m01717 ankyrin repeat family protein contains ... 27 8.6
>At5g39740.1 68418.m04813 60S ribosomal protein L5 (RPL5B) ribosomal
protein L5, rice
Length = 301
Score = 215 bits (525), Expect = 2e-56
Identities = 105/215 (48%), Positives = 144/215 (66%)
Frame = -3
Query: 670 GDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXDEY 491
GD + +AY+HELP+YG+ VGLTNYAAAY TG +++
Sbjct: 71 GDIVKASAYAHELPQYGLTVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDF 130
Query: 490 NVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRFPGYDAESKKF 311
+VEP D+ FR LDVGL RTTTG RVFGA+KGA+DGGL++PHS KRF G+ E+K+
Sbjct: 131 SVEPTDSRR-PFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFHKENKQL 189
Query: 310 NAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRAD 131
+AE+HR +I+G HV+ YM+ L +D+ + + FS YIK GV A++IE +YKK H AIRA+
Sbjct: 190 DAEIHRNYIYGGHVSNYMKLLGEDEPEKLQTHFSAYIKKGVEAESIEEMYKKVHAAIRAE 249
Query: 130 PSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQK 26
P+HKK E K + KR+N +KLT ERKN++ ++
Sbjct: 250 PNHKKTE-KSAPKEHKRYNLKKLTYEERKNKLIER 283
>At3g25520.1 68416.m03173 60S ribosomal protein L5 similar to 60S
ribosomal protein L5 GB:P49625 from [Oryza sativa]
Length = 301
Score = 211 bits (516), Expect = 3e-55
Identities = 104/215 (48%), Positives = 143/215 (66%)
Frame = -3
Query: 670 GDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXDEY 491
GD + +AY+HELP+YG+ VGLTNYAAAY TG +++
Sbjct: 71 GDIVKASAYAHELPQYGLTVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDF 130
Query: 490 NVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRFPGYDAESKKF 311
+VEP D+ FR LDVGL RTTTG RVFGA+KGA+DGGL++PHS KRF G+ E+K+
Sbjct: 131 SVEPTDSRR-PFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFHKENKQL 189
Query: 310 NAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRAD 131
+AE+HR +I+G HV+ YM+ L +D+ + + FS YIK GV A++IE +YKK H AIRAD
Sbjct: 190 DAEIHRNYIYGGHVSNYMKLLGEDEPEKLQTHFSAYIKKGVEAESIEELYKKVHAAIRAD 249
Query: 130 PSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQK 26
P + KK +K + KR+N +KLT ERKN++ ++
Sbjct: 250 P-NPKKTVKPAPKQHKRYNLKKLTYEERKNKLIER 283
>At2g39320.1 68415.m04827 OTU-like cysteine protease family protein
contains Pfam profile PF02338: OTU-like cysteine
protease
Length = 189
Score = 36.7 bits (81), Expect = 0.014
Identities = 23/94 (24%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Frame = -3
Query: 301 VHRAHIFGLHVAE-YMRSLEQDDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRADPS 125
+H +++ G+H Y ++ E+ S + ++KL + EA K+ E R D
Sbjct: 87 IHMSYLAGIHFNSIYKKNKEKGSRSSSSSSSAVWMKLQRKKEN-EAKKKEEEEKERKDME 145
Query: 124 HKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKK 23
++K+ K+ K+ + +K+K + + K K+KK
Sbjct: 146 KEEKKKDKEDKKKDKEDKKKAKVQKEKKEKKEKK 179
>At4g40020.1 68417.m05666 hypothetical protein
Length = 615
Score = 33.5 bits (73), Expect = 0.13
Identities = 29/112 (25%), Positives = 54/112 (48%), Gaps = 2/112 (1%)
Frame = -3
Query: 331 DAESKKFNAEVHRAHIFGLH--VAEYMRSLEQDDEDSFKRQFSKYIKLGVTADAIEAIYK 158
+ E K N V +I L ++E ++E++ + S RQ S + + +E + K
Sbjct: 343 EIERVKVNEAVANDNIKKLKKMLSEIEVAMEEEKQRSLNRQES------MPKEVVEVVEK 396
Query: 157 KAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFIKRL 2
K E + + + K+ KK+S K+K+ + K E K + +Q +F KR+
Sbjct: 397 KIEEKEKKEEKKENKKEKKESKKEKKEHSEK---KEDKEKKEQTHQNFDKRM 445
>At4g33300.1 68417.m04737 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 816
Score = 32.3 bits (70), Expect = 0.30
Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Frame = -3
Query: 163 YKKAHEAIRADPSHKKKELKKDSVKQKRWNK-RKLTLAERKNRIKQKKASFIK 8
+++A + D K K+L + KRWN R+LTLA + ++++ ++F+K
Sbjct: 60 HRQAQIGMLFDTLEKGKKLTDKVLSSKRWNLYRQLTLARKMEKLEKTISNFLK 112
>At5g60960.1 68418.m07647 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 521
Score = 30.7 bits (66), Expect = 0.92
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = -3
Query: 139 RADPSHKKKELKK-DSVKQKRWNKRKLTLAERKNRIKQKKASFIKR 5
R DP KK+ K+ DS +KR + T A +K R+KQ SF+K+
Sbjct: 468 RVDPRFMKKKTKEVDSNVKKRETLPEKT-ARKKKRLKQINMSFVKK 512
>At4g33690.1 68417.m04785 expressed protein
Length = 281
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = -3
Query: 172 EAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRK 65
E +YK+AH R HKKK KK K+K+ +++K
Sbjct: 243 EEVYKRAH---RKRKEHKKKLSKKHKSKEKKRDRKK 275
>At2g46790.2 68415.m05838 pseudo-response regulator 9 (APRR9) /
timing of CAB expression 1-like protein (TL1) identical
to pseudo-response regulator 9 GI:10281000 from
[Arabidopsis thaliana], timing of CAB expression 1-like
protein [Arabidopsis thaliana] GI:9247022; contains Pfam
profile PF00072: Response regulator receiver domain;
identical to cDNA timing of CAB expression 1-like
protein GI:9247021
Length = 351
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/58 (27%), Positives = 32/58 (55%)
Frame = -3
Query: 175 IEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFIKRL 2
+EA + +E I S +K +++S ++RW++ + A K R+K+K F K++
Sbjct: 264 VEAGSQSTNEGIAGQSSSTEKPKEEESA-KQRWSRSQREAALMKFRLKRKDRCFDKKV 320
>At2g46790.1 68415.m05837 pseudo-response regulator 9 (APRR9) /
timing of CAB expression 1-like protein (TL1) identical
to pseudo-response regulator 9 GI:10281000 from
[Arabidopsis thaliana], timing of CAB expression 1-like
protein [Arabidopsis thaliana] GI:9247022; contains Pfam
profile PF00072: Response regulator receiver domain;
identical to cDNA timing of CAB expression 1-like
protein GI:9247021
Length = 468
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/58 (27%), Positives = 32/58 (55%)
Frame = -3
Query: 175 IEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFIKRL 2
+EA + +E I S +K +++S ++RW++ + A K R+K+K F K++
Sbjct: 381 VEAGSQSTNEGIAGQSSSTEKPKEEESA-KQRWSRSQREAALMKFRLKRKDRCFDKKV 437
>At2g46670.1 68415.m05824 pseudo-response regulator, putative /
timing of CAB expression 1-like protein, putative
similar to pseudo-response regulator 9 [Arabidopsis
thaliana] GI:10281000, timing of CAB expression 1-like
protein [Arabidopsis thaliana] GI:9247022
Length = 183
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/58 (27%), Positives = 32/58 (55%)
Frame = -3
Query: 175 IEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFIKRL 2
+EA + +E I S +K +++S ++RW++ + A K R+K+K F K++
Sbjct: 96 VEAGSQSTNEGIAGQSSSTEKPKEEESA-KQRWSRSQREAALMKFRLKRKDRCFDKKV 152
>At1g44910.1 68414.m05146 FF domain-containing protein / WW
domain-containing protein contains Pfam profiles PF01846:
FF domain, PF00397: WW domain
Length = 946
Score = 29.1 bits (62), Expect = 2.8
Identities = 18/79 (22%), Positives = 37/79 (46%)
Frame = -3
Query: 241 DDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKL 62
++ ++ + + G+ + I ++ +KA E R K ++ K+ K+KR +K K
Sbjct: 765 EESQEYRSIGDESVSQGLFEEYITSLQEKAKEKERKRDEEKVRKEKERDEKEKRKDKDKE 824
Query: 61 TLAERKNRIKQKKASFIKR 5
+ + R K+K KR
Sbjct: 825 RREKEREREKEKGKERSKR 843
>At1g17440.2 68414.m02133 transcription initiation factor IID
(TFIID) subunit A family protein similar to SP|Q16514
Transcription initiation factor TFIID 20/15 kDa subunits
(TAFII-20/TAFII-15) {Homo sapiens}; contains Pfam
profile PF03847: Transcription initiation factor TFIID
subunit A
Length = 683
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -2
Query: 155 SP*SHPCGSIPQEERVKERLCQTEALEQTQANI 57
SP SHP S+ Q+ + ++ + QT+ L Q Q I
Sbjct: 96 SPLSHPSSSLDQQTQTQQLVQQTQQLPQQQQQI 128
>At1g17440.1 68414.m02132 transcription initiation factor IID
(TFIID) subunit A family protein similar to SP|Q16514
Transcription initiation factor TFIID 20/15 kDa subunits
(TAFII-20/TAFII-15) {Homo sapiens}; contains Pfam
profile PF03847: Transcription initiation factor TFIID
subunit A
Length = 683
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -2
Query: 155 SP*SHPCGSIPQEERVKERLCQTEALEQTQANI 57
SP SHP S+ Q+ + ++ + QT+ L Q Q I
Sbjct: 96 SPLSHPSSSLDQQTQTQQLVQQTQQLPQQQQQI 128
>At5g22080.1 68418.m02571 DNAJ heat shock N-terminal
domain-containing protein similar to J-domain protein
Jiv [Bos taurus] GI:15777193; contains Pfam profile
PF00226 DnaJ domain
Length = 246
Score = 28.7 bits (61), Expect = 3.7
Identities = 19/67 (28%), Positives = 34/67 (50%)
Frame = -3
Query: 217 QFSKYIKLGVTADAIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNR 38
+F K +KL V + +++ A+R S ++ LKKD +QK K+K E+
Sbjct: 143 EFQKELKLKVREILTDQEWRRRKMAMRI--SEEEGRLKKDEAEQKEIWKKKREHEEQWEG 200
Query: 37 IKQKKAS 17
++K+ S
Sbjct: 201 TREKRVS 207
>At1g73960.1 68414.m08565 expressed protein similar to TATA binding
protein associated factor (GI:2827282) [Homo sapiens];
similar to Transcription initiation factor TFIID 150 kDa
subunit (TAFII-150) (TAFII150) (Swiss-Prot:Q24325)
[Drosophila melanogaster]
Length = 1390
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = -3
Query: 121 KKKELKKDSVKQKRWNKRKLTLAERKNRIKQKK 23
K+KE KKD K+++ KR+ + K R+K++K
Sbjct: 1287 KEKEKKKDKEKKEKKRKREDPVYLEKKRLKKEK 1319
>At5g49430.1 68418.m06116 transducin family protein / WD-40 repeat
family protein similar to WD-repeat protein 9 (SP:Q9NSI6)
{Homo sapiens}; contains Pfam PF00400: WD domain, G-beta
repeat (4 copies)
Length = 1677
Score = 27.9 bits (59), Expect = 6.5
Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Frame = -3
Query: 253 SLEQDD-EDSFKRQFSKYIK--LGVTADAIEAIYKKAHEAIRADPSHKKKELKKDSVKQK 83
S E DD ++S +R K K G+ + + K+ + + PS+KK+ K S +++
Sbjct: 821 SYEDDDHQNSLRRSKRKKHKKEAGIMTSSGRRVKKRNFDELEGAPSNKKRTRKSRSGRKE 880
Query: 82 RWNKRKLTLAERKNRIKQKKA 20
K + + R R + A
Sbjct: 881 SKRKSSKSKSSRPRRAAARNA 901
>At3g27025.1 68416.m03381 expressed protein
Length = 299
Score = 27.5 bits (58), Expect = 8.6
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 8/48 (16%)
Frame = -3
Query: 217 QFSKYIKLGVTADAIEAIYKKAHEA---IRADP-----SHKKKELKKD 98
Q YI+ T DAI+ ++KK H A R D S KKK+LKK+
Sbjct: 183 QGEPYIEKHSTRDAIKRVFKKLHGASSKTRNDDEDDSMSKKKKDLKKN 230
>At1g15290.1 68414.m01830 tetratricopeptide repeat (TPR)-containing
protein ESTs gb|F20110 and gb|F20109 come from this
gene; contains Pfam profile PF00515: TPR Domain
Length = 1558
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = -3
Query: 304 EVHRAHIFGLHVAEYMRSLEQDDEDSFKRQFSKYIKLGVT 185
E HR H G V L+ DD +S++ + +K+ +T
Sbjct: 502 EFHRPHSVGTSVENQPTQLDWDDLESYRCIIQELVKINLT 541
>At1g14480.1 68414.m01717 ankyrin repeat family protein contains
Pfam domain, PF00023: Ankyrin repeat
Length = 412
Score = 27.5 bits (58), Expect = 8.6
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = +3
Query: 3 SLLMKEAFFCLILFFLSANVSLRLFQRFCLTE--SFFNSFFLWDGSARMASWAFL*MASI 176
S++MK+ FF L+ + +F FCL F +F + G+ S+A L MA I
Sbjct: 299 SVVMKQTFFILLWISNTVGFCCAVFYTFCLIPLGQLFTIWFFYIGTCLCISYA-LAMAVI 357
Query: 177 A 179
+
Sbjct: 358 S 358
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,628,825
Number of Sequences: 28952
Number of extensions: 263644
Number of successful extensions: 989
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 979
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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