BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fmgV10l23f (614 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 01_06_1659 + 38961637-38961639,38962361-38962433,38962531-389626... 213 9e-56 01_06_1660 + 38966999-38967001,38967685-38967757,38967841-389679... 210 5e-55 01_01_0182 - 1561779-1561873,1561977-1562050,1562140-1562207,156... 28 5.1 08_02_1410 - 26876243-26876497,26877129-26877239,26877240-268773... 28 6.8 05_07_0050 + 27332855-27333009,27333725-27333790,27333971-273340... 27 8.9 03_03_0279 - 16134422-16134608,16134703-16134947,16135046-161353... 27 8.9 02_04_0381 - 22497519-22497769,22498157-22498247 27 8.9 >01_06_1659 + 38961637-38961639,38962361-38962433,38962531-38962613, 38962732-38962858,38962950-38963029,38963112-38963228, 38963393-38963527,38963714-38963883,38963970-38964087 Length = 301 Score = 213 bits (520), Expect = 9e-56 Identities = 106/182 (58%), Positives = 123/182 (67%) Frame = +3 Query: 63 GFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVT 242 GFVK K YFKR+QVKFKRRR+GKTDY AR RL QDKNKYNTPKYR + +NKD+T Sbjct: 3 GFVKTQKTHAYFKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFV---TNKDIT 59 Query: 243 CQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXX 422 Q+ Y+ I GD ++ AAYSHELPRYG++VGLTNYAAAY TG Sbjct: 60 AQIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLTLRGLDQEYEG 119 Query: 423 XXXXXXXEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRFP 602 +Y VEP D FR LDVGL RTTTG RVFGA+KGA+DGGL++PHS KRF Sbjct: 120 NVEATGEDYYVEPADE-RRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFA 178 Query: 603 GY 608 G+ Sbjct: 179 GF 180 >01_06_1660 + 38966999-38967001,38967685-38967757,38967841-38967923, 38968042-38968168,38968260-38968339,38968428-38968544, 38968711-38968845,38969046-38969215,38969300-38969417 Length = 301 Score = 210 bits (514), Expect = 5e-55 Identities = 105/182 (57%), Positives = 122/182 (67%) Frame = +3 Query: 63 GFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVT 242 GFVK K Y KR+QVKFKRRR+GKTDY AR RL QDKNKYNTPKYR + +NKD+T Sbjct: 3 GFVKTQKTNAYHKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFV---TNKDIT 59 Query: 243 CQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXX 422 Q+ Y+ I GD ++ AAYSHELPRYG++VGLTNYAAAY TG Sbjct: 60 AQIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKLRGLDQEYEG 119 Query: 423 XXXXXXXEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRFP 602 +Y VEP D FR LDVGL RTTTG RVFGA+KGA+DGGL++PHS KRF Sbjct: 120 NIEATGEDYYVEPADE-RRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFA 178 Query: 603 GY 608 G+ Sbjct: 179 GF 180 >01_01_0182 - 1561779-1561873,1561977-1562050,1562140-1562207, 1562279-1562371,1562521-1562604,1562697-1562752, 1562843-1562950,1563051-1563225,1563237-1563422 Length = 312 Score = 28.3 bits (60), Expect = 5.1 Identities = 16/64 (25%), Positives = 31/64 (48%) Frame = -1 Query: 251 HLACYIFVGETHNQTIFRCVIFVLVLNNEAFTSIIISFPFTTPLEFYLVPLEVLFVLHNF 72 HL Y + + ++ FR +NN +TS ++++ T+P Y + +LF+ H Sbjct: 113 HLCSYTYDRDCKDEDSFRGRCVAGAINN--YTSQLLTYDATSPSTQYNLTQALLFLAHFV 170 Query: 71 NESH 60 + H Sbjct: 171 GDIH 174 >08_02_1410 - 26876243-26876497,26877129-26877239,26877240-26877324, 26877620-26877672,26878318-26878440,26878514-26878597, 26878708-26878773,26879512-26879584,26879854-26879888, 26879970-26880212 Length = 375 Score = 27.9 bits (59), Expect = 6.8 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%) Frame = +3 Query: 186 KYNTPKYRLIVRLSNKDVTCQVAYSRI--EGDHIVCAAYSHEL 308 +YNT +YR + +S K V C+ + + E DH+ A S L Sbjct: 274 RYNTSRYRELPHISIKCVFCKASVEPMGEESDHVHIIALSDAL 316 >05_07_0050 + 27332855-27333009,27333725-27333790,27333971-27334030, 27334425-27334515,27334893-27335073,27336037-27336128, 27336672-27336995 Length = 322 Score = 27.5 bits (58), Expect = 8.9 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 1/59 (1%) Frame = -1 Query: 239 YIFVGETHN-QTIFRCVIFVLVLNNEAFTSIIISFPFTTPLEFYLVPLEVLFVLHNFNE 66 Y F+G Q +F CV+F+ V N F + P PL Y + L L + E Sbjct: 234 YPFMGPLRFVQVLFLCVVFMTVELNTFFLKFCLWIPPRNPLVVYRLILWWLIAIPTIRE 292 >03_03_0279 - 16134422-16134608,16134703-16134947,16135046-16135364, 16135451-16135675,16135780-16135946,16136030-16136146, 16136234-16136407,16136489-16136584,16136669-16136885, 16137005-16137123,16137249-16137441,16137562-16137713, 16137809-16137938,16138667-16138776 Length = 816 Score = 27.5 bits (58), Expect = 8.9 Identities = 12/20 (60%), Positives = 13/20 (65%) Frame = -2 Query: 247 WHVTSLLERRTIRRYLGVLY 188 W S LERR RRYL +LY Sbjct: 775 WKYVSNLERRETRRYLEMLY 794 >02_04_0381 - 22497519-22497769,22498157-22498247 Length = 113 Score = 27.5 bits (58), Expect = 8.9 Identities = 11/26 (42%), Positives = 15/26 (57%) Frame = +2 Query: 317 WCEGWSDKLCCSIFNWSAISTKTASK 394 +C+G+ DK CC +WS K SK Sbjct: 90 YCDGYDDKSCCD--DWSGDCHKCCSK 113 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,605,195 Number of Sequences: 37544 Number of extensions: 334337 Number of successful extensions: 776 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 752 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 770 length of database: 14,793,348 effective HSP length: 79 effective length of database: 11,827,372 effective search space used: 1478421500 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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