Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10l20f
(552 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z66500-14|CAA91313.2| 1169|Caenorhabditis elegans Hypothetical p... 35 0.045
Z49968-13|CAA90265.2| 1169|Caenorhabditis elegans Hypothetical p... 35 0.045
Z46343-8|CAA86461.1| 549|Caenorhabditis elegans Hypothetical pr... 31 0.73
Z35598-9|CAA84658.1| 549|Caenorhabditis elegans Hypothetical pr... 31 0.73
U39852-1|AAK39256.2| 2314|Caenorhabditis elegans Hypothetical pr... 29 1.7
AL032627-8|CAB63354.2| 373|Caenorhabditis elegans Hypothetical ... 29 1.7
Z69661-2|CAA93494.1| 925|Caenorhabditis elegans Hypothetical pr... 28 3.9
U21308-2|AAB93313.3| 507|Caenorhabditis elegans Hypothetical pr... 28 3.9
AF000263-12|AAO21392.1| 838|Caenorhabditis elegans Hypothetical... 28 3.9
AF000263-11|AAL77184.1| 866|Caenorhabditis elegans Hypothetical... 28 3.9
AF000263-8|AAK21461.1| 924|Caenorhabditis elegans Hypothetical ... 28 3.9
AF000263-7|AAK21463.1| 925|Caenorhabditis elegans Hypothetical ... 28 3.9
Z54327-1|CAA91119.1| 569|Caenorhabditis elegans Hypothetical pr... 28 5.1
DQ340626-1|ABC65814.1| 782|Caenorhabditis elegans chondroitin p... 28 5.1
AF022968-9|AAB69883.3| 782|Caenorhabditis elegans Chondroitin p... 28 5.1
U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna bi... 27 9.0
AF098504-2|AAN84807.1| 73|Caenorhabditis elegans Nematode spec... 27 9.0
>Z66500-14|CAA91313.2| 1169|Caenorhabditis elegans Hypothetical
protein T05C12.10 protein.
Length = 1169
Score = 34.7 bits (76), Expect = 0.045
Identities = 30/123 (24%), Positives = 44/123 (35%), Gaps = 1/123 (0%)
Frame = -1
Query: 408 DNRGGVDGSNDDGLRDNGALFSLFDDNNGLGLDFSGSNRNTSGDVDVHDELHKRRGTGGN 229
+ +GG N DG +DN + D +G D +G+ +GD + + GN
Sbjct: 526 NGKGGAGNGNGDGDKDNNGKGNGTGDGDG---DGNGNGNGLTGDGNGTGDGDNNESGNGN 582
Query: 228 SRSNDNRSGLHGSSHYTTXXXXXXXXXXXXXXXXXXXDECRSNGNWFKDTGRSHGD-QGE 52
+D SG T + NGN K G GD +GE
Sbjct: 583 GDGSDKNSGAGAG----TKPENREGGDGNGNGTGDGNGDGNDNGNGSKGLGTGSGDGKGE 638
Query: 51 GNE 43
GN+
Sbjct: 639 GNK 641
Score = 30.7 bits (66), Expect = 0.73
Identities = 26/78 (33%), Positives = 36/78 (46%)
Frame = -1
Query: 411 RDNRGGVDGSNDDGLRDNGALFSLFDDNNGLGLDFSGSNRNTSGDVDVHDELHKRRGTGG 232
+DN G +G+ D NG L D NG G G N N SG+ + D K G G
Sbjct: 540 KDNNGKGNGTGDGDGDGNGNGNGLTGDGNGTG---DGDN-NESGNGN-GDGSDKNSGAGA 594
Query: 231 NSRSNDNRSGLHGSSHYT 178
++ +NR G G+ + T
Sbjct: 595 GTKP-ENREGGDGNGNGT 611
Score = 27.5 bits (58), Expect = 6.8
Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 2/70 (2%)
Frame = -1
Query: 405 NRGGVDGSNDDGLRDNGALFSLFDDNNGLGLDFSGSNRNTS--GDVDVHDELHKRRGTGG 232
+ G +G DG + G+ NG D SG +N G D D+ K G+G
Sbjct: 657 SNGSGNGKEGDGNKSGGS--GKGGAGNGKSGDGSGDGKNNGNGGTGDGKDKNGKGSGSGD 714
Query: 231 NSRSNDNRSG 202
N +S +G
Sbjct: 715 NDKSGTRAAG 724
>Z49968-13|CAA90265.2| 1169|Caenorhabditis elegans Hypothetical
protein T05C12.10 protein.
Length = 1169
Score = 34.7 bits (76), Expect = 0.045
Identities = 30/123 (24%), Positives = 44/123 (35%), Gaps = 1/123 (0%)
Frame = -1
Query: 408 DNRGGVDGSNDDGLRDNGALFSLFDDNNGLGLDFSGSNRNTSGDVDVHDELHKRRGTGGN 229
+ +GG N DG +DN + D +G D +G+ +GD + + GN
Sbjct: 526 NGKGGAGNGNGDGDKDNNGKGNGTGDGDG---DGNGNGNGLTGDGNGTGDGDNNESGNGN 582
Query: 228 SRSNDNRSGLHGSSHYTTXXXXXXXXXXXXXXXXXXXDECRSNGNWFKDTGRSHGD-QGE 52
+D SG T + NGN K G GD +GE
Sbjct: 583 GDGSDKNSGAGAG----TKPENREGGDGNGNGTGDGNGDGNDNGNGSKGLGTGSGDGKGE 638
Query: 51 GNE 43
GN+
Sbjct: 639 GNK 641
Score = 30.7 bits (66), Expect = 0.73
Identities = 26/78 (33%), Positives = 36/78 (46%)
Frame = -1
Query: 411 RDNRGGVDGSNDDGLRDNGALFSLFDDNNGLGLDFSGSNRNTSGDVDVHDELHKRRGTGG 232
+DN G +G+ D NG L D NG G G N N SG+ + D K G G
Sbjct: 540 KDNNGKGNGTGDGDGDGNGNGNGLTGDGNGTG---DGDN-NESGNGN-GDGSDKNSGAGA 594
Query: 231 NSRSNDNRSGLHGSSHYT 178
++ +NR G G+ + T
Sbjct: 595 GTKP-ENREGGDGNGNGT 611
Score = 27.5 bits (58), Expect = 6.8
Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 2/70 (2%)
Frame = -1
Query: 405 NRGGVDGSNDDGLRDNGALFSLFDDNNGLGLDFSGSNRNTS--GDVDVHDELHKRRGTGG 232
+ G +G DG + G+ NG D SG +N G D D+ K G+G
Sbjct: 657 SNGSGNGKEGDGNKSGGS--GKGGAGNGKSGDGSGDGKNNGNGGTGDGKDKNGKGSGSGD 714
Query: 231 NSRSNDNRSG 202
N +S +G
Sbjct: 715 NDKSGTRAAG 724
>Z46343-8|CAA86461.1| 549|Caenorhabditis elegans Hypothetical
protein F10F2.9 protein.
Length = 549
Score = 30.7 bits (66), Expect = 0.73
Identities = 22/73 (30%), Positives = 30/73 (41%)
Frame = -1
Query: 399 GGVDGSNDDGLRDNGALFSLFDDNNGLGLDFSGSNRNTSGDVDVHDELHKRRGTGGNSRS 220
GG + ND+ +NG + N G G GS GD D + +K G G
Sbjct: 353 GGGNTDNDNWGSNNGNSGGSWG-NGGTG-GSGGSGGGNWGDNDNYGSSNKWNGNGNQDND 410
Query: 219 NDNRSGLHGSSHY 181
NDN G + + Y
Sbjct: 411 NDNFGGGYSKNGY 423
Score = 27.9 bits (59), Expect = 5.1
Identities = 33/130 (25%), Positives = 47/130 (36%), Gaps = 10/130 (7%)
Frame = -1
Query: 408 DNRGGVDGSND-DGLRDNGALFSLFDDNNGLGLDFSGSNRNTSGDVDVHDE--------L 256
+N G G+ND DG G+ S + +N G SGSN GD + +E
Sbjct: 247 NNYGNSWGTNDNDGNSWKGSGNSNGNSDNWGGSSGSGSNGGNDGDSNYGNEGSWKPSGNS 306
Query: 255 HKRRGTGGNSRSNDNRSGLHGSSHYTTXXXXXXXXXXXXXXXXXXXDECRS-NGNWFKDT 79
+ R GGN + S +G +Y + + N NW +
Sbjct: 307 YGRNRGGGNEGGDQWGSNNNGGDNYGSELSNNWGGSNGGSGSNGGSGGGNTDNDNWGSNN 366
Query: 78 GRSHGDQGEG 49
G S G G G
Sbjct: 367 GNSGGSWGNG 376
>Z35598-9|CAA84658.1| 549|Caenorhabditis elegans Hypothetical
protein F10F2.9 protein.
Length = 549
Score = 30.7 bits (66), Expect = 0.73
Identities = 22/73 (30%), Positives = 30/73 (41%)
Frame = -1
Query: 399 GGVDGSNDDGLRDNGALFSLFDDNNGLGLDFSGSNRNTSGDVDVHDELHKRRGTGGNSRS 220
GG + ND+ +NG + N G G GS GD D + +K G G
Sbjct: 353 GGGNTDNDNWGSNNGNSGGSWG-NGGTG-GSGGSGGGNWGDNDNYGSSNKWNGNGNQDND 410
Query: 219 NDNRSGLHGSSHY 181
NDN G + + Y
Sbjct: 411 NDNFGGGYSKNGY 423
Score = 27.9 bits (59), Expect = 5.1
Identities = 33/130 (25%), Positives = 47/130 (36%), Gaps = 10/130 (7%)
Frame = -1
Query: 408 DNRGGVDGSND-DGLRDNGALFSLFDDNNGLGLDFSGSNRNTSGDVDVHDE--------L 256
+N G G+ND DG G+ S + +N G SGSN GD + +E
Sbjct: 247 NNYGNSWGTNDNDGNSWKGSGNSNGNSDNWGGSSGSGSNGGNDGDSNYGNEGSWKPSGNS 306
Query: 255 HKRRGTGGNSRSNDNRSGLHGSSHYTTXXXXXXXXXXXXXXXXXXXDECRS-NGNWFKDT 79
+ R GGN + S +G +Y + + N NW +
Sbjct: 307 YGRNRGGGNEGGDQWGSNNNGGDNYGSELSNNWGGSNGGSGSNGGSGGGNTDNDNWGSNN 366
Query: 78 GRSHGDQGEG 49
G S G G G
Sbjct: 367 GNSGGSWGNG 376
>U39852-1|AAK39256.2| 2314|Caenorhabditis elegans Hypothetical protein
K10C2.1 protein.
Length = 2314
Score = 29.5 bits (63), Expect = 1.7
Identities = 22/68 (32%), Positives = 27/68 (39%), Gaps = 2/68 (2%)
Frame = -1
Query: 372 GLRDNGALFSLFDDNNGLGLDFSGSNR--NTSGDVDVHDELHKRRGTGGNSRSNDNRSGL 199
G D GA S +N GL G+ + N DV LH G S ND +GL
Sbjct: 875 GFIDQGAKISTSSTDNQGGLACYGTTQAANWINLPDVRSALHVSSAAGAWSACNDTINGL 934
Query: 198 HGSSHYTT 175
+ H T
Sbjct: 935 YVQQHNDT 942
>AL032627-8|CAB63354.2| 373|Caenorhabditis elegans Hypothetical
protein Y41C4A.5 protein.
Length = 373
Score = 29.5 bits (63), Expect = 1.7
Identities = 17/76 (22%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Frame = -1
Query: 405 NRGGVDGSNDDGLRDNGALFSLFDDNNGLGLDFSGSNRNTSGDVDVHDELHKRRGTGGNS 226
N G+++ G ++G+ + NG + +G+N SG+ + + + G+ GN
Sbjct: 211 NNNNSSGNSNYGSNNSGSGNGNSNSGNGNSGNGNGNNAGNSGNGNGNSNGNNGNGSNGNG 270
Query: 225 RSN--DNRSGLHGSSH 184
N + +G +G+ H
Sbjct: 271 NGNNGNGNNGNNGNGH 286
>Z69661-2|CAA93494.1| 925|Caenorhabditis elegans Hypothetical
protein F48F7.4 protein.
Length = 925
Score = 28.3 bits (60), Expect = 3.9
Identities = 17/59 (28%), Positives = 28/59 (47%)
Frame = -1
Query: 360 NGALFSLFDDNNGLGLDFSGSNRNTSGDVDVHDELHKRRGTGGNSRSNDNRSGLHGSSH 184
N + +L +NG + SGS RN + + + K RG GN++ N + H +H
Sbjct: 535 NSSTSALTPRSNGQKKETSGSVRNEGSNNNSQNRNTKYRGAVGNNQHMYNGNEGHSGAH 593
>U21308-2|AAB93313.3| 507|Caenorhabditis elegans Hypothetical
protein ZK1290.6 protein.
Length = 507
Score = 28.3 bits (60), Expect = 3.9
Identities = 17/58 (29%), Positives = 22/58 (37%), Gaps = 4/58 (6%)
Frame = -1
Query: 345 SLFDDNNGLGLDFSGSNRN----TSGDVDVHDELHKRRGTGGNSRSNDNRSGLHGSSH 184
+LF G GL + N D+ +E G GG S+ G HG SH
Sbjct: 10 ALFKKPRGAGLMKNEQTHNLQRVVQNDITCPEEQRSTGGKGGGGGSHGGHGGSHGGSH 67
>AF000263-12|AAO21392.1| 838|Caenorhabditis elegans Hypothetical
protein T08B2.5f protein.
Length = 838
Score = 28.3 bits (60), Expect = 3.9
Identities = 19/54 (35%), Positives = 25/54 (46%)
Frame = -1
Query: 336 DDNNGLGLDFSGSNRNTSGDVDVHDELHKRRGTGGNSRSNDNRSGLHGSSHYTT 175
D G S S R TS D D +RR +SRS S +GSSH+++
Sbjct: 39 DRRGGRSRSRSPSRRRTSRDRR-DDRSSRRRRDRSHSRSRSPPSSANGSSHWSS 91
>AF000263-11|AAL77184.1| 866|Caenorhabditis elegans Hypothetical
protein T08B2.5c protein.
Length = 866
Score = 28.3 bits (60), Expect = 3.9
Identities = 19/54 (35%), Positives = 25/54 (46%)
Frame = -1
Query: 336 DDNNGLGLDFSGSNRNTSGDVDVHDELHKRRGTGGNSRSNDNRSGLHGSSHYTT 175
D G S S R TS D D +RR +SRS S +GSSH+++
Sbjct: 67 DRRGGRSRSRSPSRRRTSRDRR-DDRSSRRRRDRSHSRSRSPPSSANGSSHWSS 119
>AF000263-8|AAK21461.1| 924|Caenorhabditis elegans Hypothetical
protein T08B2.5a protein.
Length = 924
Score = 28.3 bits (60), Expect = 3.9
Identities = 19/54 (35%), Positives = 25/54 (46%)
Frame = -1
Query: 336 DDNNGLGLDFSGSNRNTSGDVDVHDELHKRRGTGGNSRSNDNRSGLHGSSHYTT 175
D G S S R TS D D +RR +SRS S +GSSH+++
Sbjct: 125 DRRGGRSRSRSPSRRRTSRDRR-DDRSSRRRRDRSHSRSRSPPSSANGSSHWSS 177
>AF000263-7|AAK21463.1| 925|Caenorhabditis elegans Hypothetical
protein T08B2.5b protein.
Length = 925
Score = 28.3 bits (60), Expect = 3.9
Identities = 19/54 (35%), Positives = 25/54 (46%)
Frame = -1
Query: 336 DDNNGLGLDFSGSNRNTSGDVDVHDELHKRRGTGGNSRSNDNRSGLHGSSHYTT 175
D G S S R TS D D +RR +SRS S +GSSH+++
Sbjct: 126 DRRGGRSRSRSPSRRRTSRDRR-DDRSSRRRRDRSHSRSRSPPSSANGSSHWSS 178
>Z54327-1|CAA91119.1| 569|Caenorhabditis elegans Hypothetical
protein C26D10.1 protein.
Length = 569
Score = 27.9 bits (59), Expect = 5.1
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = -1
Query: 303 GSNRNTSGDVDVHDELHK 250
G+ RN++G+VDVH LHK
Sbjct: 269 GNLRNSNGNVDVHPLLHK 286
>DQ340626-1|ABC65814.1| 782|Caenorhabditis elegans chondroitin
proteoglycan-4 protein.
Length = 782
Score = 27.9 bits (59), Expect = 5.1
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = -1
Query: 360 NGALFSLFDDNNGLG-LDFSGSNRNTSGDVDVHDELHKRRGTGGNSRSNDNRSG 202
+G L D G D SGS+ + SGD + + G G +S S D SG
Sbjct: 669 SGESIELRDSGEGSAEYDASGSSGDNSGDFNSSGSSGEASGVGESSGSEDQGSG 722
>AF022968-9|AAB69883.3| 782|Caenorhabditis elegans Chondroitin
proteoglycan protein 4 protein.
Length = 782
Score = 27.9 bits (59), Expect = 5.1
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = -1
Query: 360 NGALFSLFDDNNGLG-LDFSGSNRNTSGDVDVHDELHKRRGTGGNSRSNDNRSG 202
+G L D G D SGS+ + SGD + + G G +S S D SG
Sbjct: 669 SGESIELRDSGEGSAEYDASGSSGDNSGDFNSSGSSGEASGVGESSGSEDQGSG 722
>U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 7 protein.
Length = 332
Score = 27.1 bits (57), Expect = 9.0
Identities = 22/71 (30%), Positives = 29/71 (40%)
Frame = -1
Query: 387 GSNDDGLRDNGALFSLFDDNNGLGLDFSGSNRNTSGDVDVHDELHKRRGTGGNSRSNDNR 208
G ND R++ F DN G G F G R D ++ G GG+ +R
Sbjct: 244 GGNDRDRRESSGGFR---DNRGGGGGFGGGGR------DRFNDRSGGGGYGGDRDRGGDR 294
Query: 207 SGLHGSSHYTT 175
G G S Y+T
Sbjct: 295 GGDRGGSRYST 305
>AF098504-2|AAN84807.1| 73|Caenorhabditis elegans Nematode
specific peptide family,group d protein 10 protein.
Length = 73
Score = 27.1 bits (57), Expect = 9.0
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = -1
Query: 324 GLGLDFSGSNRNTSGDVDVHDELHKRRGTGGNSRSNDNRSGLHGSS 187
G G + GSN ++SG + +G GG S +N+N G G +
Sbjct: 12 GYGSGYMGSNASSSG----YAREDYAQGQGGQSNNNNNNQGGSGGN 53
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,662,566
Number of Sequences: 27780
Number of extensions: 96129
Number of successful extensions: 447
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 435
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -