Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10l19r
         (663 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17748| Best HMM Match : DUF1312 (HMM E-Value=0.0024)                30   1.9  
SB_28410| Best HMM Match : zf-CCCH (HMM E-Value=7.9e-05)               29   3.4  
SB_12109| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  

>SB_17748| Best HMM Match : DUF1312 (HMM E-Value=0.0024)
          Length = 1272

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
 Frame = -1

Query: 489 LXQVXIQIASXVXDTMRDSAIXHKRSLVRXLIGVSNA--FSSSETHVRNAKXFXRNGGVR 316
           L  +   IA+ V +    + +     +VR   GV N+  F +S + VRN+     +GGVR
Sbjct: 139 LASIAFDIATAVREKPPYADVSVIAGVVRNSGGVRNSGGFRNSGS-VRNSGGVRNSGGVR 197

Query: 315 GTASTLSNGSLLXEIGIDXNS 253
            +    +    +  IG+D NS
Sbjct: 198 NSGGVSAGSVGVRIIGVDRNS 218



 Score = 28.3 bits (60), Expect = 5.9
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = -1

Query: 408 VRXLIGVSNAFSSSETH-VRNAKXFXRNGGVRGTASTLSNGSLLXEIGIDXNSQNF 244
           VR   GV N+ S   +  VRN+     +GGVR +    +    +  IG+D NS  F
Sbjct: 476 VRNSGGVRNSGSVRNSGGVRNSGGVRNSGGVRNSGGVSAGSVGVRIIGVDGNSGGF 531


>SB_28410| Best HMM Match : zf-CCCH (HMM E-Value=7.9e-05)
          Length = 905

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 19/61 (31%), Positives = 28/61 (45%)
 Frame = -1

Query: 432 AIXHKRSLVRXLIGVSNAFSSSETHVRNAKXFXRNGGVRGTASTLSNGSLLXEIGIDXNS 253
           A    R L   ++ VS    SS T    A       GVR  +STLS+G L  ++ +D  +
Sbjct: 813 AFAKGRRLKEQMLDVSWYRPSSPTAASAASPATPTPGVRNRSSTLSSGGLDEDLALDLGT 872

Query: 252 Q 250
           +
Sbjct: 873 E 873


>SB_12109| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4085

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 18/40 (45%), Positives = 21/40 (52%)
 Frame = +2

Query: 275 SXRRLPLDRVLAVPLTPPLRXXSFALRT*VSEELKAFETP 394
           S + L  D+ LAV  TPP     FAL   V EE KA + P
Sbjct: 197 SFKSLVRDKELAVYTTPPGSDVVFALSRDVEEEEKAQKVP 236


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,330,879
Number of Sequences: 59808
Number of extensions: 172529
Number of successful extensions: 225
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)