Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10l19f
         (622 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    25   0.51 
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    23   2.1  
AM292356-1|CAL23168.2|  251|Tribolium castaneum gustatory recept...    23   2.7  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    21   8.3  
AJ845189-1|CAH60166.1|  515|Tribolium castaneum putative esteras...    21   8.3  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    21   8.3  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 25.0 bits (52), Expect = 0.51
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -3

Query: 488  GATDRMLVPRGNTS*GVFVMQYST 417
            G T+R+LVP   T  GVF ++ +T
Sbjct: 942  GNTERVLVPGDQTEAGVFTLRPAT 965


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 516 HVDAAGQAGRSHGPDASP 463
           H DAAG   R++GP+  P
Sbjct: 192 HHDAAGYGLRNYGPEPVP 209


>AM292356-1|CAL23168.2|  251|Tribolium castaneum gustatory receptor
           candidate 35 protein.
          Length = 251

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -3

Query: 575 DFVIVYSDMVTSSRPQFEKPTSMPLDR 495
           D V ++ D+V  +RP+F+      +DR
Sbjct: 202 DEVQIFIDVVQHNRPEFKAARFFSIDR 228


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -2

Query: 453 HQLRGLRDAVQHGTH*HRQQPLHNQ 379
           HQ + +    Q G + H+Q P H Q
Sbjct: 183 HQQQHMMYGGQQGANMHQQGPPHQQ 207


>AJ845189-1|CAH60166.1|  515|Tribolium castaneum putative esterase
           protein.
          Length = 515

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 109 YQLSISLRIKLFEFKKIRNIR 47
           Y   IS+  KL  FK+I NI+
Sbjct: 397 YLYRISVETKLNVFKRIGNIK 417


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -2

Query: 453 HQLRGLRDAVQHGTH*HRQQPLHNQ 379
           HQ + +    Q G + H+Q P H Q
Sbjct: 185 HQQQHMMYGGQQGANMHQQGPPHQQ 209


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,600
Number of Sequences: 336
Number of extensions: 3186
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15875032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)