Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10l19f
         (622 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22E12.01 ||SPAC890.09|triose phosphate transporter |Schizosa...    36   0.006
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo...    26   3.8  
SPAC1039.04 |||nicotinic acid plasma membrane transporter |Schiz...    26   5.1  
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi...    26   5.1  
SPAC644.06c |cdr1|nim1|GIN4 family protein kinase Cdr1|Schizosac...    25   6.7  
SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|...    25   6.7  
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa...    25   8.8  

>SPAC22E12.01 ||SPAC890.09|triose phosphate transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 35.5 bits (78), Expect = 0.006
 Identities = 14/28 (50%), Positives = 21/28 (75%)
 Frame = +1

Query: 496 LSSGIDVGFSNWGLELVTISLYTMTKST 579
           L +G+D+G SN  LE +T+S YTM +S+
Sbjct: 132 LVTGLDIGLSNASLETITLSFYTMCRSS 159


>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
           Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 979

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = -1

Query: 181 AACISYRAFSIQQTLR*REYRLLSYQLSISLRIKLFEFKKI 59
           + C  YR   + +T + R YR L+ QLS SL +++ E  +I
Sbjct: 539 SGCSDYRKILVTETYKGRFYRFLT-QLSKSLLMEISEEDEI 578


>SPAC1039.04 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 7/55 (12%)
 Frame = +1

Query: 346 FKYPLTVVMYHLVVKWLLSVLVRSV-LYCITK-TPQLVLPLG-----TSIRSVAP 489
           FK  LTV  + + + WLL  +   V L  I    PQ+V  +G     T++ +VAP
Sbjct: 277 FKQSLTVFKHPIAILWLLEEMALGVPLNSINNWLPQIVAAMGFSSVNTNLMTVAP 331


>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 984

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 200 LMKTCLLANPSRNGAMCVCKKGSYLWASSCF 292
           L+K+ LL   +R   M  CK+G ++W  + F
Sbjct: 53  LIKSILLPFHNRIHGMLPCKQGLFVWGGTYF 83


>SPAC644.06c |cdr1|nim1|GIN4 family protein kinase
           Cdr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -2

Query: 489 RSHGPDASPERQHQLRGLRDAVQH 418
           R HGP +  E  H L  + DAV H
Sbjct: 95  RKHGPLSEREAAHYLSQILDAVAH 118


>SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 570

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +1

Query: 496 LSSGIDVGFSNWGLELVTISL 558
           LS GI  GF  +GLE VT S+
Sbjct: 236 LSCGIPAGFIAYGLEFVTKSI 256


>SPAC22F8.07c |rtf1||replication termination factor
           Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +2

Query: 428 ASRRPLSWCCLSGLASGPWLRPAC 499
           A  R + W CLS  A+  W   AC
Sbjct: 387 AEERMIDWKCLSEYANHLWTADAC 410


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,618,425
Number of Sequences: 5004
Number of extensions: 53174
Number of successful extensions: 140
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)