Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10l19f
(622 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0621 - 35147070-35148359,35148499-35148579,35148665-351487... 33 0.24
06_03_0465 + 21049412-21049878,21049947-21050790,21050994-210511... 32 0.42
05_05_0086 + 22280463-22280548,22281289-22281394,22281923-222820... 32 0.42
04_03_0963 + 21285160-21285579,21286585-21286635,21287017-212875... 31 0.74
06_03_0675 - 23428948-23431389 30 1.7
04_04_1697 - 35454337-35454576,35454657-35454888,35455045-354552... 29 3.0
12_01_0233 + 1750772-1752058 28 5.2
11_01_0236 + 1811822-1812971,1814930-1814979,1815676-1816116,181... 28 5.2
08_02_1084 - 24232968-24234779 27 9.1
01_01_0326 - 2642408-2643607 27 9.1
>03_06_0621 -
35147070-35148359,35148499-35148579,35148665-35148741,
35148792-35149298,35149405-35150278
Length = 942
Score = 32.7 bits (71), Expect = 0.24
Identities = 19/72 (26%), Positives = 35/72 (48%)
Frame = +1
Query: 367 VMYHLVVKWLLSVLVRSVLYCITKTPQLVLPLGTSIRSVAPTGLSSGIDVGFSNWGLELV 546
V+ ++++ L +V + + + +VL SI ++ P GL+ GI GF L L+
Sbjct: 483 VVVNILMNALYQTIVMGHVITLKEAIVVVLMNNFSIAAITPVGLAIGISSGFGVLALTLI 542
Query: 547 TISLYTMTKSTT 582
L+ K +T
Sbjct: 543 AAILFKRWKRST 554
>06_03_0465 +
21049412-21049878,21049947-21050790,21050994-21051121,
21051232-21051247
Length = 484
Score = 31.9 bits (69), Expect = 0.42
Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 7/37 (18%)
Frame = +2
Query: 449 WCCLSGLASGPWLRPACPAASTW-------ASRIGAW 538
WCCL + W A P AS W ASR+G W
Sbjct: 353 WCCLLVCVASVWAGGAAPLASAWMLMGGVAASRLGLW 389
>05_05_0086 +
22280463-22280548,22281289-22281394,22281923-22282008,
22290700-22290925
Length = 167
Score = 31.9 bits (69), Expect = 0.42
Identities = 18/42 (42%), Positives = 21/42 (50%)
Frame = -2
Query: 546 DELQAPIREAHVDAAGQAGRSHGPDASPERQHQLRGLRDAVQ 421
D P R H AAG+A G A +R LR LRD+VQ
Sbjct: 108 DAALPPGRRPHRAAAGRAEAGRGGPAQAQRPRPLRVLRDSVQ 149
>04_03_0963 +
21285160-21285579,21286585-21286635,21287017-21287502,
21287866-21287961
Length = 350
Score = 31.1 bits (67), Expect = 0.74
Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = -2
Query: 264 PFLQTHIAP-FRLGFASKHVFINIALSAQLLVFRTGHFLFNKHYDDASTA 118
P LQT AP L A FIN+ L Q F T F+ KH D T+
Sbjct: 254 PTLQTWSAPNITLTMAGVDAFINMCLPRQRASFTTVAFVLEKHQIDVVTS 303
>06_03_0675 - 23428948-23431389
Length = 813
Score = 29.9 bits (64), Expect = 1.7
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = -2
Query: 528 IREAHVDAAGQAGRSHGPDASPERQHQLRGLRDAVQHG 415
+RE+ + + +GR +GP+ S E Q+ + D + G
Sbjct: 412 VRESSIPRSQPSGRQYGPNCSAENQYSIANFSDISRSG 449
>04_04_1697 -
35454337-35454576,35454657-35454888,35455045-35455252,
35455380-35455629,35456232-35456354
Length = 350
Score = 29.1 bits (62), Expect = 3.0
Identities = 20/87 (22%), Positives = 36/87 (41%), Gaps = 2/87 (2%)
Frame = +1
Query: 328 RWLLR--DFKYPLTVVMYHLVVKWLLSVLVRSVLYCITKTPQLVLPLGTSIRSVAPTGLS 501
+W+ + DFK+PLTV H + S+ ++ + P + + R + P
Sbjct: 37 KWIFQKLDFKFPLTVSCVHFICS---SIGAYIAIHVLKAKPLIQVEPEDRWRRIFPMSFV 93
Query: 502 SGIDVGFSNWGLELVTISLYTMTKSTT 582
I++ N L + +S KS T
Sbjct: 94 FCINIVLGNVSLRYIPVSFMQTIKSFT 120
>12_01_0233 + 1750772-1752058
Length = 428
Score = 28.3 bits (60), Expect = 5.2
Identities = 17/78 (21%), Positives = 35/78 (44%)
Frame = +1
Query: 343 DFKYPLTVVMYHLVVKWLLSVLVRSVLYCITKTPQLVLPLGTSIRSVAPTGLSSGIDVGF 522
++ +P+++ M H+ L+V++ VL + + SV P G + + F
Sbjct: 119 NWPFPISLTMIHMAFCASLAVVLVRVLRVVAVPASPPMTPSLYAASVVPIGALYALSLWF 178
Query: 523 SNWGLELVTISLYTMTKS 576
SN +++S M K+
Sbjct: 179 SNSAYIYLSVSFIQMLKA 196
>11_01_0236 +
1811822-1812971,1814930-1814979,1815676-1816116,
1816199-1816309,1816934-1817074,1817153-1817323,
1817421-1817625,1817714-1817886,1817997-1818079,
1818487-1818626,1818806-1818891,1818957-1819142,
1819172-1819365,1820387-1820736,1821153-1821235
Length = 1187
Score = 28.3 bits (60), Expect = 5.2
Identities = 17/78 (21%), Positives = 35/78 (44%)
Frame = +1
Query: 343 DFKYPLTVVMYHLVVKWLLSVLVRSVLYCITKTPQLVLPLGTSIRSVAPTGLSSGIDVGF 522
++ +P+++ M H+ L+V++ VL + + SV P G + + F
Sbjct: 79 NWPFPISLTMIHMAFCASLAVVLVRVLRVVAVPASPPMTPSLYAASVVPIGALYALSLWF 138
Query: 523 SNWGLELVTISLYTMTKS 576
SN +++S M K+
Sbjct: 139 SNSAYIYLSVSFIQMLKA 156
>08_02_1084 - 24232968-24234779
Length = 603
Score = 27.5 bits (58), Expect = 9.1
Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Frame = -2
Query: 615 ENYREAENENDRCRFRHCVQRYGDELQAPIREAHVDAAGQAGRSHG-PDASPERQHQLR 442
E RE + E +R R R RYGD + R++ + GRS G S E H R
Sbjct: 539 ERDRERDRERERDRHRDDRDRYGDYHRHRDRDSERNEDWDRGRSSGVRSRSREVDHSKR 597
>01_01_0326 - 2642408-2643607
Length = 399
Score = 27.5 bits (58), Expect = 9.1
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = -3
Query: 386 TTKWYITTVNGYLKSLSSQRW*KVRPIDKEK*SKMRPRDKSPFCRHTSPH 237
T + Y+ + L SLS Q + +DKE+ SK+ + PF R PH
Sbjct: 215 TVESYVALASCILVSLSQQEGTHMFDVDKEQWSKL-DDNSLPFVRGAVPH 263
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,259,005
Number of Sequences: 37544
Number of extensions: 366793
Number of successful extensions: 1127
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1096
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1126
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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