Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10l19f
         (622 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12926| Best HMM Match : Arm (HMM E-Value=8.9e-05)                   30   1.7  
SB_6334| Best HMM Match : zf-C2H2 (HMM E-Value=1.5e-26)                29   3.0  
SB_673| Best HMM Match : VWA (HMM E-Value=8.9e-25)                     28   5.3  
SB_54230| Best HMM Match : EGF (HMM E-Value=0)                         28   5.3  
SB_36925| Best HMM Match : EGF (HMM E-Value=1.5e-16)                   28   5.3  
SB_57784| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_25387| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_23044| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_56365| Best HMM Match : SDH_beta (HMM E-Value=7.6)                  28   7.0  
SB_2970| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.0  
SB_58700| Best HMM Match : Ras (HMM E-Value=2.7e-15)                   27   9.3  
SB_51674| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.3  
SB_34004| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.3  
SB_9925| Best HMM Match : Kinesin (HMM E-Value=0.00094)                27   9.3  

>SB_12926| Best HMM Match : Arm (HMM E-Value=8.9e-05)
          Length = 166

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +3

Query: 513 RGLLEL-GPGARHHIAVHNDEIDNDHFHSRLRDNS 614
           R L+EL  PG    + VH     NDH HS LR N+
Sbjct: 44  RKLVELLKPGDTKSVKVHTRRYTNDHDHSTLRRNA 78


>SB_6334| Best HMM Match : zf-C2H2 (HMM E-Value=1.5e-26)
          Length = 611

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = -2

Query: 507 AAGQAGRSHGPDASPERQHQLRGLRDAVQHGTH*HRQQPLHNQVVHHH 364
           AAG+ G S  P A   R HQ   + D  + G H + + P + Q + HH
Sbjct: 82  AAGRGGTSSSPVAVMSRMHQ--SISDYPRIG-HSYHENPWYKQSLDHH 126


>SB_673| Best HMM Match : VWA (HMM E-Value=8.9e-25)
          Length = 257

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +2

Query: 218 LANPSRNGAMCVCKKGSYLWA 280
           L NP +NGA+C   +GSYL A
Sbjct: 224 LDNPCKNGAVCKNTEGSYLCA 244


>SB_54230| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1359

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 212  CLLANPSRNGAMCVCKKGSY 271
            C + NP RNGA C+   G Y
Sbjct: 1061 CKVQNPCRNGATCINSMGDY 1080



 Score = 27.5 bits (58), Expect = 9.3
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 212 CLLANPSRNGAMCVCKKGSY 271
           C + NP RNGA C+   G Y
Sbjct: 880 CKVQNPCRNGATCINSIGDY 899


>SB_36925| Best HMM Match : EGF (HMM E-Value=1.5e-16)
          Length = 908

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +2

Query: 164 VRNTSSCALRAMLMKTCLLANPSRNGAMCVCK 259
           VR+ SS +  ++    C LANP  NG  C  K
Sbjct: 784 VRSASSLSYPSVCRNGCCLANPCLNGGTCTEK 815


>SB_57784| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 593

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 12/52 (23%), Positives = 28/52 (53%)
 Frame = +3

Query: 303 INRPYFLPTLAAKGLQIPIDGGDVPLGCEVVAVCASAFRAVLHHEDPSAGVA 458
           +++P F+ + + +G+++ +D   VP G   V + + + R ++ H     G A
Sbjct: 8   MSQPIFVVSASCQGIEVGLDNDSVPFG--AVMMGSQSTRKLIMHNTGDVGAA 57


>SB_25387| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 533

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 16/60 (26%), Positives = 21/60 (35%)
 Frame = -2

Query: 558 QRYGDELQAPIREAHVDAAGQAGRSHGPDASPERQHQLRGLRDAVQHGTH*HRQQPLHNQ 379
           Q     +  P    H  ++GQ  + H P  +P    Q  GL          H  QP H Q
Sbjct: 389 QHMAQNVSYPATHQHYQSSGQGDQGHRPQQNPPNDQQHVGL--GAYPPIQAHPTQPYHMQ 446


>SB_23044| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2162

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +2

Query: 212  CLLANPSRNGAMCVCKKGSYLWASSCFIFLY 304
            C L  P  +G++C+  +G Y     C+I +Y
Sbjct: 1390 CALVKPCPSGSVCLDVEGQYELLRICYILVY 1420


>SB_56365| Best HMM Match : SDH_beta (HMM E-Value=7.6)
          Length = 331

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 12/52 (23%), Positives = 28/52 (53%)
 Frame = +3

Query: 303 INRPYFLPTLAAKGLQIPIDGGDVPLGCEVVAVCASAFRAVLHHEDPSAGVA 458
           +++P F+ + + +G+++ +D   VP G   V + + + R ++ H     G A
Sbjct: 139 MSQPIFVVSASCQGIEVGLDNDSVPFG--AVMMGSQSTRKLIMHNTGDVGAA 188


>SB_2970| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 85

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 16/59 (27%), Positives = 25/59 (42%)
 Frame = -2

Query: 588 NDRCRFRHCVQRYGDELQAPIREAHVDAAGQAGRSHGPDASPERQHQLRGLRDAVQHGT 412
           +D+  + H  +RY + ++  +     D      R+H     PE   Q  G  DAV  GT
Sbjct: 20  DDQMNYNHQARRYAESIENGVWTNQFDNTANR-RAHFETTGPEIWQQTDGQIDAVVFGT 77


>SB_58700| Best HMM Match : Ras (HMM E-Value=2.7e-15)
          Length = 857

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +1

Query: 439 TPQLVLPLGTSIRSVAPTGLSSGID 513
           TPQ   P GTS+  V P  L +G+D
Sbjct: 261 TPQASTPYGTSLLMVKPDTLPNGLD 285


>SB_51674| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 833

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 420 HGTH*HRQQPLHNQVVHHHRQ 358
           H  H H+QQ  H+   HHH+Q
Sbjct: 239 HKQHHHQQQRHHHHEQHHHQQ 259


>SB_34004| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 235

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 212 CLLANPSRNGAMCVCKKGSY 271
           C+   P +NGA C+  KG Y
Sbjct: 169 CVTKKPCKNGASCINNKGGY 188


>SB_9925| Best HMM Match : Kinesin (HMM E-Value=0.00094)
          Length = 1671

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 17/63 (26%), Positives = 28/63 (44%)
 Frame = -2

Query: 537  QAPIREAHVDAAGQAGRSHGPDASPERQHQLRGLRDAVQHGTH*HRQQPLHNQVVHHHRQ 358
            Q  I+  HVD   +  R    +A+ ER  QL GLR   Q G      +    +++   ++
Sbjct: 1561 QVEIKVYHVDDIDKLQRFMQAEANEERYQQLHGLRQ--QQGALKEELRRSKQRLIEDDKR 1618

Query: 357  WVF 349
            W +
Sbjct: 1619 WSY 1621


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,167,950
Number of Sequences: 59808
Number of extensions: 440077
Number of successful extensions: 1333
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1324
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1536271375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)