Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10l19f
         (622 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024791-12|AAT81181.1|  401|Caenorhabditis elegans Hypothetical...    88   4e-18
AC024791-11|AAF60659.1|  410|Caenorhabditis elegans Hypothetical...    88   4e-18
Z70312-6|CAA94387.1|  807|Caenorhabditis elegans Hypothetical pr...    27   8.2  
Z70309-14|CAA94363.1|  807|Caenorhabditis elegans Hypothetical p...    27   8.2  
U10438-5|AAA19086.1|  395|Caenorhabditis elegans Nuclear hormone...    27   8.2  
AY204168-1|AAO39172.1|  395|Caenorhabditis elegans nuclear recep...    27   8.2  

>AC024791-12|AAT81181.1|  401|Caenorhabditis elegans Hypothetical
           protein Y47G6A.7b protein.
          Length = 401

 Score = 88.2 bits (209), Expect = 4e-18
 Identities = 37/89 (41%), Positives = 61/89 (68%)
 Frame = +1

Query: 316 TFYQRWLLRDFKYPLTVVMYHLVVKWLLSVLVRSVLYCITKTPQLVLPLGTSIRSVAPTG 495
           TFYQ+W ++++K PL VV  H V+K+L ++ +R +  C+ +T +  +     +R +AP G
Sbjct: 95  TFYQKWFIKNYKLPLLVVSGHYVLKYLFAITIRFIYECL-RTRRTRVSFRDQLRWLAPIG 153

Query: 496 LSSGIDVGFSNWGLELVTISLYTMTKSTT 582
           + + +D+G SNW LE VT+SLYTM KS++
Sbjct: 154 ICASMDIGLSNWALEYVTVSLYTMAKSSS 182


>AC024791-11|AAF60659.1|  410|Caenorhabditis elegans Hypothetical
           protein Y47G6A.7a protein.
          Length = 410

 Score = 88.2 bits (209), Expect = 4e-18
 Identities = 37/89 (41%), Positives = 61/89 (68%)
 Frame = +1

Query: 316 TFYQRWLLRDFKYPLTVVMYHLVVKWLLSVLVRSVLYCITKTPQLVLPLGTSIRSVAPTG 495
           TFYQ+W ++++K PL VV  H V+K+L ++ +R +  C+ +T +  +     +R +AP G
Sbjct: 95  TFYQKWFIKNYKLPLLVVSGHYVLKYLFAITIRFIYECL-RTRRTRVSFRDQLRWLAPIG 153

Query: 496 LSSGIDVGFSNWGLELVTISLYTMTKSTT 582
           + + +D+G SNW LE VT+SLYTM KS++
Sbjct: 154 ICASMDIGLSNWALEYVTVSLYTMAKSSS 182


>Z70312-6|CAA94387.1|  807|Caenorhabditis elegans Hypothetical
           protein ZC168.1 protein.
          Length = 807

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = +3

Query: 291 LFFFINRPYFLPTL--AAKGLQIPIDGGDVPLGCEVVAVCASAFRAVL 428
           +F  +  P+ + +L  A+KG    +D GD+     V  +C+  F  VL
Sbjct: 711 VFLGLGLPWVIASLYWASKGESFRVDAGDLGFSVTVFMICSVLFLVVL 758


>Z70309-14|CAA94363.1|  807|Caenorhabditis elegans Hypothetical
           protein ZC168.1 protein.
          Length = 807

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = +3

Query: 291 LFFFINRPYFLPTL--AAKGLQIPIDGGDVPLGCEVVAVCASAFRAVL 428
           +F  +  P+ + +L  A+KG    +D GD+     V  +C+  F  VL
Sbjct: 711 VFLGLGLPWVIASLYWASKGESFRVDAGDLGFSVTVFMICSVLFLVVL 758


>U10438-5|AAA19086.1|  395|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 10 protein.
          Length = 395

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/33 (36%), Positives = 14/33 (42%)
 Frame = +2

Query: 140 CLLNRKCPVRNTSSCALRAMLMKTCLLANPSRN 238
           C    KCPV  +  CA R    + CL     RN
Sbjct: 54  CQFQGKCPVDKSIRCACRHCRFEKCLQVGMDRN 86


>AY204168-1|AAO39172.1|  395|Caenorhabditis elegans nuclear receptor
           NHR-10 protein.
          Length = 395

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/33 (36%), Positives = 14/33 (42%)
 Frame = +2

Query: 140 CLLNRKCPVRNTSSCALRAMLMKTCLLANPSRN 238
           C    KCPV  +  CA R    + CL     RN
Sbjct: 54  CQFQGKCPVDKSIRCACRHCRFEKCLQVGMDRN 86


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,606,464
Number of Sequences: 27780
Number of extensions: 310663
Number of successful extensions: 977
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 936
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 975
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)