Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10l19f
         (622 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    23   1.8  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    23   1.8  
AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding prote...    23   2.4  
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    22   4.2  
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    22   4.2  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   4.2  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   7.3  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    21   7.3  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 514 RRCRWTGRSEPRTGC*SREATPAE 443
           +RC+W G  EP T   + +AT A+
Sbjct: 349 KRCKWMGIHEPET---TSDATSAQ 369


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 514 RRCRWTGRSEPRTGC*SREATPAE 443
           +RC+W G  EP T   + +AT A+
Sbjct: 349 KRCKWMGIHEPET---TSDATSAQ 369


>AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding protein
           ASP5 protein.
          Length = 143

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 330 LAAKGLQIPIDGGDVPLGCEVVAVC 404
           +  K L+I +   +V +G E+VAVC
Sbjct: 88  MIVKQLEITMPPEEVVIGKEIVAVC 112


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +1

Query: 337 LRDFKYPLTVVMYH 378
           LR  KYP+ V +YH
Sbjct: 12  LRALKYPMVVHVYH 25


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +1

Query: 337 LRDFKYPLTVVMYH 378
           LR  KYP+ V +YH
Sbjct: 12  LRALKYPMVVHVYH 25


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = -2

Query: 156  FLFNKHYDDASTAFYHISYQSL*E*NFLNSRRYETYEPV 40
            F F+KH  D          +++ E  F+N    +TYE V
Sbjct: 887  FPFDKHILDKLPTLISNYIEAVKEGKFMNVNMLDTYESV 925


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +1

Query: 10  GWRILPQRGFDRFV 51
           GW I P  G++R+V
Sbjct: 181 GWTIAPMFGWNRYV 194


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
          rhodopsin protein.
          Length = 154

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +1

Query: 10 GWRILPQRGFDRFV 51
          GW I P  G++R+V
Sbjct: 57 GWTIAPMFGWNRYV 70


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,130
Number of Sequences: 438
Number of extensions: 3764
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)