Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10l18r
         (735 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    23   1.9  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    23   3.4  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    23   3.4  
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    22   5.9  

>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 560 TFLNRCYKCAFQICIVIDNFRN 625
           TF++RCYK   Q  +   NFRN
Sbjct: 699 TFVDRCYKMQEQFTL---NFRN 717


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +2

Query: 200 LLNVSGILY*LLSLKITQSIFADI*SLLFFFNQLFASSIEHLTGKIRDS 346
           ++N++G+L+  L+    Q++FA I     F  +L     EH  G  R S
Sbjct: 443 VMNINGVLFVFLTNMTFQNVFAVI---NVFSGELPVFLQEHRNGMYRPS 488


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +2

Query: 200 LLNVSGILY*LLSLKITQSIFADI*SLLFFFNQLFASSIEHLTGKIRDS 346
           ++N++G+L+  L+    Q++FA I     F  +L     EH  G  R S
Sbjct: 443 VMNINGVLFVFLTNMTFQNVFAVI---NVFSGELPVFLQEHRNGMYRPS 488


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -1

Query: 468 LKTDGLAWELFQMDLMVLRVMLYIHSLLLLPMESGKL 358
           LKTD     +    L++  V+LY  SL   P+  G+L
Sbjct: 36  LKTDKNCTIVIIFHLILFAVLLYFASLEKNPLFDGQL 72


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,913
Number of Sequences: 336
Number of extensions: 3719
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19675845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)