Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10l18r
(735 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0724 + 27578337-27578371,27578492-27578607,27578717-275788... 164 6e-41
10_08_0381 + 17398972-17399014,17400823-17400981,17401066-174012... 163 1e-40
08_02_1600 + 28133818-28133900,28134240-28134345,28135169-281352... 79 4e-15
03_03_0008 - 13674602-13674708,13675272-13675439,13676169-136767... 28 6.7
01_01_0460 + 3404272-3404274,3405198-3405302,3405363-3405447,340... 28 6.7
03_02_0404 - 8165211-8165318,8165397-8165733,8166031-8166242,816... 28 8.8
>04_04_0724 +
27578337-27578371,27578492-27578607,27578717-27578875,
27578954-27579129,27580406-27580683,27580759-27580894,
27580984-27581095,27581177-27581268
Length = 367
Score = 164 bits (399), Expect = 6e-41
Identities = 81/156 (51%), Positives = 98/156 (62%), Gaps = 1/156 (0%)
Frame = -3
Query: 733 VPVKDVKRVIIWGNHSSTQFPDASNAVAIVGGAQKSVSEIINDDAYLKGAFVTTVQKRGA 554
V V DVK IIWGNHSSTQFPDAS+A ++ V E+I D+ +L+ FVT VQ+RGA
Sbjct: 210 VHVGDVKNAIIWGNHSSTQFPDASHATVSTDRGERPVRELIADEIWLREEFVTDVQQRGA 269
Query: 553 AVIXXXXXXXXXXXXXXXSDHMRDWFLGT-EDRWVSMGVVSDGSYGTPRDVVYSFPVTVT 377
AVI DHMRDW LGT + WVSMGV SDGSYG P V +SFPVT
Sbjct: 270 AVIKARKQSSSLSAASAACDHMRDWILGTPKGTWVSMGVYSDGSYGVPEGVFFSFPVTCE 329
Query: 376 NGKWKIVEGLTISDFARQMLDATGKELVEEKQEALD 269
G+W +V+GL I DFAR ++ + EL EEK A +
Sbjct: 330 KGEWSVVQGLEIDDFARSKMETSATELKEEKSIAYE 365
>10_08_0381 +
17398972-17399014,17400823-17400981,17401066-17401241,
17401565-17401842,17401938-17402073,17402183-17402294,
17402421-17402515
Length = 332
Score = 163 bits (396), Expect = 1e-40
Identities = 77/151 (50%), Positives = 100/151 (66%), Gaps = 1/151 (0%)
Frame = -3
Query: 733 VPVKDVKRVIIWGNHSSTQFPDASNAVAIVGGAQKSVSEIINDDAYLKGAFVTTVQKRGA 554
V V DVK IIWGNHSSTQ+PD ++A +K V E++ DD +L F++TVQ+RGA
Sbjct: 174 VQVTDVKNAIIWGNHSSTQYPDVNHATVKTPSGEKPVRELVADDEWLNTEFISTVQQRGA 233
Query: 553 AVIXXXXXXXXXXXXXXXSDHMRDWFLGT-EDRWVSMGVVSDGSYGTPRDVVYSFPVTVT 377
A+I DH+RDW LGT E +VSMGV SDGSYG P ++YSFPVT +
Sbjct: 234 AIIKARKQSSALSAASSACDHIRDWVLGTPEGTFVSMGVYSDGSYGVPAGLIYSFPVTCS 293
Query: 376 NGKWKIVEGLTISDFARQMLDATGKELVEEK 284
G+W IV+GL I +F+R+ +DAT +EL EEK
Sbjct: 294 GGEWTIVQGLPIDEFSRKKMDATAQELSEEK 324
>08_02_1600 +
28133818-28133900,28134240-28134345,28135169-28135255,
28135354-28135438,28135510-28135691,28135921-28135991,
28136078-28136168,28136250-28136324,28136436-28136537,
28136620-28136742,28136823-28136891,28136990-28137058,
28137158-28137211,28137315-28137368
Length = 416
Score = 79.0 bits (186), Expect = 4e-15
Identities = 50/149 (33%), Positives = 76/149 (51%), Gaps = 3/149 (2%)
Frame = -3
Query: 718 VKRVIIWGNHSSTQFPDASNAVAIVGGAQKSVSEIINDDAYLKGAFVTTVQKRGAAVIXX 539
V + IWGNHS+TQ PD NA + G + V E+I D +L+ F TVQKRG +I
Sbjct: 247 VSNMTIWGNHSTTQVPDFLNAK--ING--RPVKEVIKDTKWLEDEFTKTVQKRGGVLIQK 302
Query: 538 XXXXXXXXXXXXXSDHMRDWFLGT-EDRWVSMGVVSDGS-YGTPRDVVYSFPV-TVTNGK 368
D +R T E W S GV + G+ YG D+V+S P + +G
Sbjct: 303 WGRSSAASTAVSIVDAIRSLVNPTPEGDWFSTGVYTTGNPYGIAEDIVFSMPCRSKGDGD 362
Query: 367 WKIVEGLTISDFARQMLDATGKELVEEKQ 281
+++V+ + + DF + + + EL+ EK+
Sbjct: 363 YELVKDVAMDDFLWERIKKSEAELLAEKR 391
>03_03_0008 -
13674602-13674708,13675272-13675439,13676169-13676787,
13676868-13677330,13677855-13678036,13678093-13678235,
13678315-13678423,13679000-13679456,13680490-13682473,
13682507-13682626,13682920-13682971
Length = 1467
Score = 28.3 bits (60), Expect = 6.7
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +3
Query: 372 PLVTVTGNEYTTSRGVP*DPSETTPMLTHLSSVPRNQS 485
P VT G+E P DP+E +L + ++P + S
Sbjct: 107 PSVTAVGSERCVVNSAPDDPTENVSILDEMRNIPLSTS 144
>01_01_0460 +
3404272-3404274,3405198-3405302,3405363-3405447,
3405626-3405680,3405998-3406136,3406215-3406358
Length = 176
Score = 28.3 bits (60), Expect = 6.7
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +1
Query: 160 INKLLLPIYIS-IVPT*CKWYFILIIILKDYSVNLCRHLKPPV 285
+ KLL P+ + P C W +L++ +D V + + + PPV
Sbjct: 93 VGKLLKPVLNEHVTPITCYWSLVLLLHSEDKLVRVFKKVYPPV 135
>03_02_0404 -
8165211-8165318,8165397-8165733,8166031-8166242,
8166419-8166526,8166676-8166783,8166884-8166993,
8167122-8167228,8167349-8167566,8167674-8167841,
8168033-8168151,8168438-8168525,8168655-8168849,
8168968-8169271,8169363-8169480,8170034-8170133,
8170283-8170468
Length = 861
Score = 27.9 bits (59), Expect = 8.8
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +3
Query: 426 DPSETTPMLTHLSSVPRNQSLMWSDAALAAERADD 530
+PSE +P ++ P NQ L+W A DD
Sbjct: 619 NPSEASPEWVSDNAYPTNQPLIWYKTKFTAPAGDD 653
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,913,463
Number of Sequences: 37544
Number of extensions: 363173
Number of successful extensions: 771
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 766
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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