Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10l18r
         (735 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32263| Best HMM Match : Ldh_1_C (HMM E-Value=8.80015e-42)          165   2e-41
SB_38683| Best HMM Match : Ldh_1_N (HMM E-Value=1.7e-11)               83   2e-16
SB_11394| Best HMM Match : GntR (HMM E-Value=7.9)                      29   3.9  
SB_54156| Best HMM Match : Peptidase_C2 (HMM E-Value=0)                29   5.2  

>SB_32263| Best HMM Match : Ldh_1_C (HMM E-Value=8.80015e-42)
          Length = 411

 Score =  165 bits (402), Expect = 2e-41
 Identities = 76/155 (49%), Positives = 100/155 (64%), Gaps = 1/155 (0%)
 Frame = -3

Query: 727 VKDVKRVIIWGNHSSTQFPDASNAVAIVGGAQKSVSEIINDDAYLKGAFVTTVQKRGAAV 548
           V  VK VIIWGNHS+TQ+PD ++    V G   ++ + + DD YL G F++TVQKRGAA+
Sbjct: 253 VDQVKNVIIWGNHSATQYPDVNHGKVCVNGNWVAIRDAVKDDDYLNGEFISTVQKRGAAI 312

Query: 547 IXXXXXXXXXXXXXXXSDHMRDWFLGT-EDRWVSMGVVSDGSYGTPRDVVYSFPVTVTNG 371
           I                DHMRDW+ GT E  WVSMGVVSDGSYG    +VYSFPV + + 
Sbjct: 313 IKARKLSSAMSAAKAICDHMRDWWFGTREGEWVSMGVVSDGSYGIEEGLVYSFPVQICDR 372

Query: 370 KWKIVEGLTISDFARQMLDATGKELVEEKQEALDV 266
            WKIV+GL+I+DF+R+ ++AT  EL  E +   D+
Sbjct: 373 TWKIVQGLSINDFSREKMNATATELKGESEAVKDL 407


>SB_38683| Best HMM Match : Ldh_1_N (HMM E-Value=1.7e-11)
          Length = 462

 Score = 83.4 bits (197), Expect = 2e-16
 Identities = 51/160 (31%), Positives = 80/160 (50%), Gaps = 11/160 (6%)
 Frame = -3

Query: 718 VKRVIIWGNHSSTQFPDASNAV------AIVG----GAQKSVSEIINDDAYLKGAFVTTV 569
           +K +I+WGN     +PDAS+A       AI G    G  + V E+++D+ +L G FV  +
Sbjct: 305 IKDLIVWGNPGFNHYPDASHARVDGFDGAIWGPHVPGFTRPVPEMVHDNKWLSGEFVEVL 364

Query: 568 QKRGAAVIXXXXXXXXXXXXXXXSDHMRDWF-LGTEDRWVSMGVVSDGSYGTPRDVVYSF 392
           +K                        ++DW    + D W S+GV+S+G Y  P  + +SF
Sbjct: 365 KKPSEG-------ENALMGSVAVKSLLQDWCQCASSDMW-SLGVISEGWYDIPEGIAFSF 416

Query: 391 PVTVTNGKWKIVEGLTISDFARQMLDATGKELVEEKQEAL 272
           PV  T G W++VEGL +SD  +++L    +E   E +E L
Sbjct: 417 PVKFTGGSWQVVEGLALSDSLKEVLKNIAQEAKAETEEVL 456


>SB_11394| Best HMM Match : GntR (HMM E-Value=7.9)
          Length = 451

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
 Frame = -2

Query: 668 CFECCSYCWRCSKICF*NYQ*RCIFERRICNNGSKTWC-CRY---CCQENVICSFCC*SC 501
           C+ C   C  C  +C+ + +  C   R +C +     C CR    C    V+CS C  +C
Sbjct: 227 CYSCRVACCSCRVVCY-SCRVACCSCRVVCYSCRVACCSCRVHMKCSSCRVVCSSCRVAC 285


>SB_54156| Best HMM Match : Peptidase_C2 (HMM E-Value=0)
          Length = 1001

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -2

Query: 569 SKTWCCRYCCQENVICSFCC*SC 501
           +KTW CR C  EN +    C  C
Sbjct: 121 TKTWICRICQHENPVSIVLCNEC 143


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,227,885
Number of Sequences: 59808
Number of extensions: 450705
Number of successful extensions: 1063
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 960
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1057
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)