Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10l18r
         (735 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125955-4|AAO12428.1|  181|Caenorhabditis elegans Hypothetical ...   158   4e-39
AF125955-3|AAD14720.1|  336|Caenorhabditis elegans Hypothetical ...   158   4e-39
AF125955-5|AAO12427.1|  273|Caenorhabditis elegans Hypothetical ...    81   8e-16
U70850-1|AAB09124.2|  104|Caenorhabditis elegans Hypothetical pr...    32   0.37 

>AF125955-4|AAO12428.1|  181|Caenorhabditis elegans Hypothetical
           protein F46E10.10c protein.
          Length = 181

 Score =  158 bits (383), Expect = 4e-39
 Identities = 72/158 (45%), Positives = 99/158 (62%), Gaps = 1/158 (0%)
 Frame = -3

Query: 727 VKDVKRVIIWGNHSSTQFPDASNAVAIVGGAQKSVSEIINDDAYLKGAFVTTVQKRGAAV 548
           + +VK VIIWGNHS TQFPD ++A     G +      + D+A+L+G F+ TVQKRG  +
Sbjct: 21  IGNVKNVIIWGNHSGTQFPDVTHATVNKNGTETDAYAAVGDNAFLQGPFIATVQKRGGVI 80

Query: 547 IXXXXXXXXXXXXXXXSDHMRDWFLGTE-DRWVSMGVVSDGSYGTPRDVVYSFPVTVTNG 371
           I                DH+ DW  GT+  ++VSM V SDGSYG P+ +++SFPVT+  G
Sbjct: 81  IEKRKLSSAMSAAKAACDHIHDWHFGTKAGQFVSMAVPSDGSYGIPQGLIFSFPVTIEGG 140

Query: 370 KWKIVEGLTISDFARQMLDATGKELVEEKQEALDVCKD 257
           +WKIV+GL+  DFA+  + AT KEL EE+ +AL  C D
Sbjct: 141 EWKIVQGLSFDDFAKGKIAATTKELEEERDDALKACDD 178


>AF125955-3|AAD14720.1|  336|Caenorhabditis elegans Hypothetical
           protein F46E10.10a protein.
          Length = 336

 Score =  158 bits (383), Expect = 4e-39
 Identities = 72/158 (45%), Positives = 99/158 (62%), Gaps = 1/158 (0%)
 Frame = -3

Query: 727 VKDVKRVIIWGNHSSTQFPDASNAVAIVGGAQKSVSEIINDDAYLKGAFVTTVQKRGAAV 548
           + +VK VIIWGNHS TQFPD ++A     G +      + D+A+L+G F+ TVQKRG  +
Sbjct: 176 IGNVKNVIIWGNHSGTQFPDVTHATVNKNGTETDAYAAVGDNAFLQGPFIATVQKRGGVI 235

Query: 547 IXXXXXXXXXXXXXXXSDHMRDWFLGTE-DRWVSMGVVSDGSYGTPRDVVYSFPVTVTNG 371
           I                DH+ DW  GT+  ++VSM V SDGSYG P+ +++SFPVT+  G
Sbjct: 236 IEKRKLSSAMSAAKAACDHIHDWHFGTKAGQFVSMAVPSDGSYGIPQGLIFSFPVTIEGG 295

Query: 370 KWKIVEGLTISDFARQMLDATGKELVEEKQEALDVCKD 257
           +WKIV+GL+  DFA+  + AT KEL EE+ +AL  C D
Sbjct: 296 EWKIVQGLSFDDFAKGKIAATTKELEEERDDALKACDD 333


>AF125955-5|AAO12427.1|  273|Caenorhabditis elegans Hypothetical
           protein F46E10.10b protein.
          Length = 273

 Score = 81.0 bits (191), Expect = 8e-16
 Identities = 35/88 (39%), Positives = 48/88 (54%)
 Frame = -3

Query: 727 VKDVKRVIIWGNHSSTQFPDASNAVAIVGGAQKSVSEIINDDAYLKGAFVTTVQKRGAAV 548
           + +VK VIIWGNHS TQFPD ++A     G +      + D+A+L+G F+ TVQKRG  +
Sbjct: 176 IGNVKNVIIWGNHSGTQFPDVTHATVNKNGTETDAYAAVGDNAFLQGPFIATVQKRGGVI 235

Query: 547 IXXXXXXXXXXXXXXXSDHMRDWFLGTE 464
           I                DH+ DW  GT+
Sbjct: 236 IEKRKLSSAMSAAKAACDHIHDWHFGTK 263


>U70850-1|AAB09124.2|  104|Caenorhabditis elegans Hypothetical
           protein F28F9.3 protein.
          Length = 104

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 19/62 (30%), Positives = 39/62 (62%)
 Frame = -1

Query: 477 SLALKTDGLAWELFQMDLMVLRVMLYIHSLLLLPMESGKLLRVSLSLILPVKCSMLLAKS 298
           S+  K  G+ W+ +++  + +  +L +HSLL+LP+  G L ++S++L + +  S  LA +
Sbjct: 11  SITRKYFGIRWD-YRISSINMASLLDLHSLLVLPL--GDLPKISIALPISLALSNSLALT 67

Query: 297 WL 292
           +L
Sbjct: 68  FL 69


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,120,170
Number of Sequences: 27780
Number of extensions: 348268
Number of successful extensions: 953
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 942
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)