Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10l18f
         (646 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    24   1.4  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   1.9  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   2.5  
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    22   4.4  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    22   4.4  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    22   4.4  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    22   4.4  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   7.7  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +2

Query: 326 SWSWLTVLCHFWLGF 370
           +WS+ T++C  W+ F
Sbjct: 106 NWSFGTIMCDLWVSF 120


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = +3

Query: 183 SCCNWCC 203
           SCC WCC
Sbjct: 10  SCCCWCC 16


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 11/32 (34%), Positives = 13/32 (40%)
 Frame = -1

Query: 349 EHSQPTP*QHLQVHPS*AQYQEGGGRQVAEVQ 254
           +H      QHLQ H     YQ+    Q A  Q
Sbjct: 185 QHQSQAQQQHLQAHEQHMMYQQQQQSQAASQQ 216


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = -2

Query: 333 LHDNTFKYTHHRRNIKK 283
           +H+N +KY ++  N  K
Sbjct: 90  IHNNNYKYNYNNNNYNK 106


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = -2

Query: 333 LHDNTFKYTHHRRNIKK 283
           +H+N +KY ++  N  K
Sbjct: 90  IHNNNYKYNYNNNNYNK 106


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = -2

Query: 333 LHDNTFKYTHHRRNIKK 283
           +H+N +KY ++  N  K
Sbjct: 90  IHNNNYKYNYNNNNYNK 106


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = -2

Query: 333 LHDNTFKYTHHRRNIKK 283
           +H+N +KY ++  N  K
Sbjct: 90  IHNNNYKYNYNNNNYNK 106


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +1

Query: 556 NPANTNALICSKYAPSIPKENFTAM 630
           +P   NAL+ +  AP++P E    M
Sbjct: 37  SPMELNALVGTPAAPNMPAEEGEGM 61


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,513
Number of Sequences: 438
Number of extensions: 3400
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)