Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10l17r
         (749 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC569.05c |||spermidine family transporter |Schizosaccharomyce...    31   0.13 
SPBC36.02c |||spermidine family transporter |Schizosaccharomyces...    29   0.54 
SPCC70.06 |||nuclear export factor|Schizosaccharomyces pombe|chr...    25   8.7  

>SPCC569.05c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 576

 Score = 31.5 bits (68), Expect = 0.13
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 540 SLNGPLLSALYITCLSKYLLLCSAYEGFVYYIP 638
           ++N P    L ITC+  Y+ LCS +   V+ +P
Sbjct: 125 AVNWPFRKKLKITCVYSYVALCSTFASSVFSVP 157


>SPBC36.02c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 577

 Score = 29.5 bits (63), Expect = 0.54
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +3

Query: 540 SLNGPLLSALYITCLSKYLLLCSAYEGFVYYIP 638
           ++N P    L  TC+  Y+ LCS++   V+ +P
Sbjct: 126 AVNWPFKRKLKTTCILAYVALCSSFASSVFAVP 158


>SPCC70.06 |||nuclear export factor|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 458

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -2

Query: 451 SNHISLFVINSFNTNKINTIY 389
           SN ISL +++SFNT   + +Y
Sbjct: 293 SNSISLSLVSSFNTEATSNLY 313


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,356,378
Number of Sequences: 5004
Number of extensions: 41543
Number of successful extensions: 84
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)