Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10l17f
(597 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23H4.06 |gln1||glutamate-ammonia ligase Gln1|Schizosaccharom... 118 6e-28
SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9 |Schizosacchar... 29 0.52
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha... 27 2.1
SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces pom... 27 2.7
SPCC1450.07c |||D-amino acid oxidase |Schizosaccharomyces pombe|... 26 4.8
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual 25 6.3
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 25 8.4
SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces p... 25 8.4
SPBC211.07c |ubc8||ubiquitin conjugating enzyme Ubc8|Schizosacch... 25 8.4
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ... 25 8.4
SPAC13G7.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 8.4
>SPAC23H4.06 |gln1||glutamate-ammonia ligase
Gln1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 359
Score = 118 bits (284), Expect = 6e-28
Identities = 61/125 (48%), Positives = 80/125 (64%), Gaps = 1/125 (0%)
Frame = +3
Query: 225 VLSKT-LLSRYNDLPLPADKILATYIWIDGSGEHLRCKDRTLNFIPKAPKDLPIWNFDGS 401
+LSK +L++Y DLP K++A YIWIDG HLR K TL+ P + L +WNFDGS
Sbjct: 9 LLSKAAILNKYADLPQNG-KVMAEYIWIDGFN-HLRSKTMTLDAKPSSIDQLRVWNFDGS 66
Query: 402 STNQADGHNSDTYLVPRAIYKDPFRRGNHILVMCDTYKYNMEPTESNNRISCQEAYDKCK 581
ST QA G+NSDT L P A+Y DPFRRG++ILV+ Y + P N+R +C + +K
Sbjct: 67 STGQAPGNNSDTLLKPVAMYNDPFRRGDNILVLAACYTADGSPNGFNHRDACAKLLEKHA 126
Query: 582 DDEPW 596
D E W
Sbjct: 127 DKETW 131
>SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 524
Score = 29.1 bits (62), Expect = 0.52
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -2
Query: 347 QGAIFAPQVFARAVDPNVGGENLVSRQWKIIVSTQ 243
Q IF AR +VGG + SR WKI+ +Q
Sbjct: 292 QDVIFGVDALARERCVSVGGRDRTSRLWKIVEESQ 326
>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 697
Score = 27.1 bits (57), Expect = 2.1
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +3
Query: 159 HTKIEDNPKILSGPVLTNSPNAVLSKTLLSRYNDLPLPA 275
H KIE+N + +S P ++ S L L + + LPA
Sbjct: 116 HDKIEENKRPISQPQVSASEKVTLKDLSLEPHQPVSLPA 154
>SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 447
Score = 26.6 bits (56), Expect = 2.7
Identities = 17/69 (24%), Positives = 32/69 (46%)
Frame = +3
Query: 168 IEDNPKILSGPVLTNSPNAVLSKTLLSRYNDLPLPADKILATYIWIDGSGEHLRCKDRTL 347
++DN + S +S N+ LS + + +P+PA + T + D + R T
Sbjct: 295 LQDNASLTSQGSNLSSQNSGLSSSSSGIFGRMPIPAQSLDTTMLRTDSNSNIRRA---TT 351
Query: 348 NFIPKAPKD 374
+FI + K+
Sbjct: 352 SFIANSEKE 360
>SPCC1450.07c |||D-amino acid oxidase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 348
Score = 25.8 bits (54), Expect = 4.8
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +3
Query: 399 SSTNQADGHNSDTYLVPRAI 458
+ T +G NSDTY++PR +
Sbjct: 219 TETRILNGKNSDTYIIPRPL 238
>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1496
Score = 25.4 bits (53), Expect = 6.3
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Frame = +3
Query: 357 PKAPKDLPIWNFDGSSTNQADGH-NSDTYLVPRAIYKDPFRRGNHILVMCDTYKYNMEPT 533
PKA K I +F S NQ +GH + V ++ F R + CD+ YN+E
Sbjct: 875 PKANKAGTITDFSRSVNNQRNGHLTVGSDAVCLSLGDSQFHR-----LSCDSVGYNIEVK 929
Query: 534 ESNNRISCQ 560
++S Q
Sbjct: 930 RYVKKVSGQ 938
>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1958
Score = 25.0 bits (52), Expect = 8.4
Identities = 16/51 (31%), Positives = 22/51 (43%)
Frame = +1
Query: 376 CLYGTSMAAQPTKLMGTILIPTSYLVLFTRIHSVEEITSSLCVIRINTTWS 528
C YG S QP + S L I V E+++ LC+ +T WS
Sbjct: 1733 CRYGVSFETQPNLNFQNSEL--SRLQTKMHIPGVIELSNHLCLTASSTEWS 1781
>SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 489
Score = 25.0 bits (52), Expect = 8.4
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = -3
Query: 286 RILSAGSGRSLYRLSSVLDSTAFGELVKTGPDR-IFGLSSILVCAVSA 146
++ +G LY++S DS E VKTG R + +S V VSA
Sbjct: 256 KVKRVSTGEVLYKISGKWDSEMSVESVKTGETRPLLDVSKHDVYLVSA 303
>SPBC211.07c |ubc8||ubiquitin conjugating enzyme
Ubc8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 25.0 bits (52), Expect = 8.4
Identities = 8/19 (42%), Positives = 15/19 (78%)
Frame = +1
Query: 472 SVEEITSSLCVIRINTTWS 528
+++E++ S+C+ IN TWS
Sbjct: 76 NIDELSGSVCLDVINQTWS 94
>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1427
Score = 25.0 bits (52), Expect = 8.4
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -1
Query: 246 SVAFWTALRSGSWLKPAPIESSDYLLFWYAL 154
S+ FW AL SG+ L + SS L+ YA+
Sbjct: 878 SIHFWIALWSGNSLFSLKLPSSFSFLWGYAI 908
>SPAC13G7.09c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 135
Score = 25.0 bits (52), Expect = 8.4
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +1
Query: 25 EAIETFYAPTKPFVNTFSRNIQHSHRG 105
E +T P K F+N RN+Q +RG
Sbjct: 36 EKEKTKLRPNKVFLNNMVRNVQSHNRG 62
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,599,261
Number of Sequences: 5004
Number of extensions: 57530
Number of successful extensions: 164
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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