Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10l16r
(768 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC61.04c |||Rab GTPase binding|Schizosaccharomyces pombe|chr 3... 106 3e-24
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy... 29 0.97
SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyc... 28 1.3
SPAC1F8.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 28 1.3
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc... 27 2.2
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo... 27 3.0
SPBC800.10c |||EPS15 repeat family actin cortical patch componen... 27 3.0
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch... 27 3.0
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ... 26 5.2
SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|ch... 26 5.2
SPCC1183.04c |pet127||mitochondrial membrane protein Pet127|Schi... 26 5.2
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 26 6.8
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom... 25 9.0
>SPCC61.04c |||Rab GTPase binding|Schizosaccharomyces pombe|chr
3|||Manual
Length = 227
Score = 106 bits (255), Expect = 3e-24
Identities = 63/163 (38%), Positives = 95/163 (58%)
Frame = -1
Query: 543 ILEKTLAVLNPFHGQSKADDANFLLRDTDIAGPIXXXXXXXXXXXLSGNKAHFGFVYGLS 364
I +KT VLNPF K D + ++ DTD+AGPI L G ++HFG++YG++
Sbjct: 71 IKQKTTHVLNPF----KHVDVH-IMDDTDMAGPILFCLLFSTFLSLHG-RSHFGYIYGIA 124
Query: 363 MMSVILMYFLLSLMSHTEGVFTILSVASVLGYCMLPMVVLAGLGIFISLEGTVGLSISAV 184
++ + ++F+L LMS FT SVLGY +LP+VV+A + G G +++A+
Sbjct: 125 LLGSLSLHFVLRLMSAKNLFFT--RTVSVLGYSLLPLVVIAFFKNIFTFNGIAGYALAAL 182
Query: 183 AVIWSALSASRLFVTMSGDAEQRPLIAYPCALINGVFALLVLF 55
A IW +AS +FV + R L+AYP AL GVFA++ +F
Sbjct: 183 ACIWCTYAASAMFVGILQVNNMRFLVAYPIALFYGVFAVITVF 225
>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2052
Score = 28.7 bits (61), Expect = 0.97
Identities = 17/38 (44%), Positives = 21/38 (55%)
Frame = -1
Query: 720 TDXQNYSFDQTQGTIPANNNQYYNPNFFTPAPIPGEAT 607
T+ QN + D++Q T N YNP TP PIP AT
Sbjct: 497 TESQNET-DESQNT----ENVDYNPQTHTPVPIPTTAT 529
>SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 381
Score = 28.3 bits (60), Expect = 1.3
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +2
Query: 380 NPKWALLPDRKRQTAKARQNAMGPAMSVSLSKKFAS 487
+P W++LPD R + R+N M A KKF S
Sbjct: 115 HPLWSILPDEVRNSLLERKNVM--AFDYEQVKKFVS 148
>SPAC1F8.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 120
Score = 28.3 bits (60), Expect = 1.3
Identities = 12/46 (26%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = -3
Query: 229 IYLFRRYCRPQYISCCSNLVCFVCKSTICHYVRRCRAKT-INCIPL 95
+++F +C P ++SCC+ + + K ++R C ++ + C PL
Sbjct: 7 LFIFATFC-PCFLSCCAFMSHWKLKDFSFRFLRMCGERSLVVCYPL 51
>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
Thi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 775
Score = 27.5 bits (58), Expect = 2.2
Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = -3
Query: 235 RNIYLFRRYCRPQYISCCSNLVCFVCK--STICHYVRRCRAKTIN 107
R ++ ++CR + I C C CK + C Y ++ + KT++
Sbjct: 33 RRVFRACKHCRQKKIKCNGGQPCISCKTLNIECVYAQKSQNKTLS 77
>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2244
Score = 27.1 bits (57), Expect = 3.0
Identities = 10/37 (27%), Positives = 21/37 (56%)
Frame = +2
Query: 434 QNAMGPAMSVSLSKKFASSALDCPWKGLRTANVFSRI 544
++ + P+ L K ++++ D PWK T N+ S++
Sbjct: 203 ESPINPSSITGLGKDWSTAFEDIPWKNPNTENLTSQV 239
>SPBC800.10c |||EPS15 repeat family actin cortical patch component
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1116
Score = 27.1 bits (57), Expect = 3.0
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -1
Query: 732 QTFPTDXQNYSFDQTQGTIPANNN 661
+T P+ +N FD T G AN+N
Sbjct: 1014 ETIPSSTENQYFDTTSGAFEANSN 1037
>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
Mok12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2352
Score = 27.1 bits (57), Expect = 3.0
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +1
Query: 541 NSIRVYFKFVQEGWLIKLI 597
N IR YF V++GW +KLI
Sbjct: 583 NEIRSYFPQVRDGWDLKLI 601
>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 582
Score = 26.2 bits (55), Expect = 5.2
Identities = 15/47 (31%), Positives = 19/47 (40%)
Frame = -1
Query: 768 SNTLEQLPRLRFQTFPTDXQNYSFDQTQGTIPANNNQYYNPNFFTPA 628
+N L P + + FPT NY F Q YNPN P+
Sbjct: 250 NNLLRAQPNVNCENFPTTVPNYPFQQPS----------YNPNALVPS 286
>SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 497
Score = 26.2 bits (55), Expect = 5.2
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Frame = -1
Query: 381 FVYGLSMMSVILMYFLLSLMS--HTEGVFTILSVASVLGYCMLPMV 250
+++G+S + I + +S S HT+ VF +S S++GYC+ MV
Sbjct: 378 WLFGISPIPYICILSCISSNSAGHTKKVF--MSAVSMIGYCVGNMV 421
>SPCC1183.04c |pet127||mitochondrial membrane protein
Pet127|Schizosaccharomyces pombe|chr 3|||Manual
Length = 524
Score = 26.2 bits (55), Expect = 5.2
Identities = 13/54 (24%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = -1
Query: 402 GNKAHFGFVYGLSMMSVILMYFLLSLMSHTEGVFTIL-SVASVLGYCMLPMVVL 244
GN+ F Y + S + Y L + + + +GVF + + + G+ +P+V +
Sbjct: 301 GNRISFEREYFDLIRSAFMKYSLQARLGYMQGVFVAYHNTSDIFGFQYIPLVAM 354
Score = 25.8 bits (54), Expect = 6.8
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +3
Query: 342 TSI*QTSLTVHTQTQNGLYCLIEKGK 419
T + +++ +VH QNGLYC I+K K
Sbjct: 170 TRLCRSASSVHISYQNGLYC-IDKDK 194
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 25.8 bits (54), Expect = 6.8
Identities = 19/86 (22%), Positives = 37/86 (43%)
Frame = +2
Query: 56 NKTSNAKTPLISAQGYAINGLCSASPDIVTNSRLADKADQITATADILRPTVPSKEINIP 235
N S P S +GL S+S I +++R ++ + +T+ + + S +
Sbjct: 973 NTNSLTVKPESSLSSSTTSGLTSSSSTIPSSTR-SESNSESASTSSASKRSSSSTSLVQS 1031
Query: 236 KPAKTTIGSIQ*PSTLATLRIVKTPS 313
P KT + T + + +VK P+
Sbjct: 1032 NPVKTVVSLESYKFTTSKISLVKNPT 1057
>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 963
Score = 25.4 bits (53), Expect = 9.0
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 209 VPSKEINIPKPAKTTIGSIQ*PSTL 283
+PS EI+ PA TT+ S P T+
Sbjct: 201 LPSSEISTKAPASTTVSSSVDPGTI 225
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,155,360
Number of Sequences: 5004
Number of extensions: 66795
Number of successful extensions: 184
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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