Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10l16r
         (768 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0634 + 9986742-9987512                                           90   2e-18
10_07_0071 - 12597668-12597784,12597966-12598166,12598804-12599601     34   0.11 
09_04_0749 + 19919367-19920869                                         30   1.8  
06_01_0399 - 2860692-2861241,2861330-2862171                           30   2.3  
11_01_0021 - 143576-143932,144434-144667,144988-145066,145138-14...    28   9.4  
06_03_1498 + 30589634-30589750,30590441-30590577,30590797-30591514     28   9.4  
01_06_1648 - 38897268-38897480,38897816-38897884,38899712-38900038     28   9.4  

>03_02_0634 + 9986742-9987512
          Length = 256

 Score = 90.2 bits (214), Expect = 2e-18
 Identities = 58/167 (34%), Positives = 90/167 (53%), Gaps = 3/167 (1%)
 Frame = -1

Query: 546 RILEKTLAVLNPFHGQSKADDANFLLRDTDIAGPIXXXXXXXXXXXLSGNKAHFGFVYGL 367
           +I  KTL++L+P      AD +  L  D D++GP            L+G K HFG V G 
Sbjct: 97  QIWRKTLSILHPLRS---ADPS--LHADADLSGPFLFLLSFGLFQLLAG-KFHFGIVLGW 150

Query: 366 SMMSVILMYFLLSLMSH-TEGVFTILSVASVLGYCMLPMVVLAGLGIFISLEGTVGLSIS 190
             ++ + +YF+ S++S    G   +    S++GYCMLPMV+ + + +F+   G +   + 
Sbjct: 151 VTVASLFLYFVFSMLSGGRRGDLDLYRCVSLVGYCMLPMVIFSAISLFLPRGGGLIFGVG 210

Query: 189 AVAVIWSALSASRLFVTM--SGDAEQRPLIAYPCALINGVFALLVLF 55
              V+WS    +RL   +  SGD E R LIAY C L+  +F+LLV+F
Sbjct: 211 MGFVLWSTRVCTRLLAELASSGD-EHRGLIAYACWLVYMLFSLLVVF 256


>10_07_0071 - 12597668-12597784,12597966-12598166,12598804-12599601
          Length = 371

 Score = 34.3 bits (75), Expect = 0.11
 Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
 Frame = -1

Query: 366 SMMSVILMYFLLSLMSHTEGVFTILSVASVLGYCMLPMV--VLAGLGI 229
           S  S++LM++L S +SH    FT ++ A  L +C+ P V  V + LG+
Sbjct: 65  SSCSLLLMFYLFSSVSHLVTAFTAVASAMALFFCLSPYVNCVRSRLGV 112


>09_04_0749 + 19919367-19920869
          Length = 500

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = +2

Query: 110 NGLCSASPDIVTNSRLADKADQITAT--ADILRPTVPSKEINIPKPAKTTIG 259
           NG+CS SP +     +A +A+ + AT  A  + PTVPS  ++   P   + G
Sbjct: 234 NGVCSPSPRVPDILFVAQEAEYMAATWGARTIGPTVPSAYLDNRLPDDASYG 285


>06_01_0399 - 2860692-2861241,2861330-2862171
          Length = 463

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = -1

Query: 264 MLPMVVLAGLGIFISLEGTVGLSISAVAVIWSALSASRLFVTMSGD 127
           +LP    A LG+F+ L G +G       V+WSA  A  L +  + D
Sbjct: 66  VLPRAFAAALGMFVPLAGRIG---DGGRVVWSAADAVPLVLAAADD 108


>11_01_0021 -
           143576-143932,144434-144667,144988-145066,145138-145253,
           145717-145861,146048-146465,147206-147869
          Length = 670

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
 Frame = +2

Query: 122 SASPDIVTNSRLADKADQITATADILRPTVPSKEINIP-KPAKTTIGSIQ*PSTLATLRI 298
           S SP   T ++  DK D  TA     R T+P + +NIP    ++T+ ++   + L  L  
Sbjct: 135 SVSPAPPTPAQTGDKEDTDTAANHSPRSTLPVRLLNIPVDRLRSTLSTLS-LTDLIDLVA 193

Query: 299 VKTPSV*LISESKKYINITD 358
              PS     + KK  ++ D
Sbjct: 194 RSLPSPDTHPDKKKLFSVHD 213


>06_03_1498 + 30589634-30589750,30590441-30590577,30590797-30591514
          Length = 323

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 16/44 (36%), Positives = 20/44 (45%)
 Frame = +2

Query: 62  TSNAKTPLISAQGYAINGLCSASPDIVTNSRLADKADQITATAD 193
           TSN  +    A G  ING   A  D     R   +ADQ++ T D
Sbjct: 177 TSNGFSATNGASGAKINGTAKAKQDGSIRRRQKVEADQVSNTTD 220


>01_06_1648 - 38897268-38897480,38897816-38897884,38899712-38900038
          Length = 202

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 16/66 (24%), Positives = 30/66 (45%)
 Frame = -1

Query: 402 GNKAHFGFVYGLSMMSVILMYFLLSLMSHTEGVFTILSVASVLGYCMLPMVVLAGLGIFI 223
           G +    F+ G+ ++ +   Y  + L +H   + T+L    V    ++ +   AGL IF 
Sbjct: 127 GPRGQMTFLVGMGLVLITSFYLTVILDAHPP-LITVLLFVPVTVLVIVAVCACAGLAIFC 185

Query: 222 SLEGTV 205
             EG +
Sbjct: 186 FEEGQI 191


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,523,565
Number of Sequences: 37544
Number of extensions: 397838
Number of successful extensions: 897
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 874
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 895
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)