Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10l16r
         (768 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14318| Best HMM Match : No HMM Matches (HMM E-Value=.)             132   4e-31
SB_24811| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.027
SB_18564| Best HMM Match : ShTK (HMM E-Value=6.5)                      33   0.34 
SB_42838| Best HMM Match : 7tm_1 (HMM E-Value=9.4e-39)                 30   1.8  
SB_40745| Best HMM Match : CLN3 (HMM E-Value=1.9e-08)                  29   3.1  
SB_55713| Best HMM Match : zf-C3HC4 (HMM E-Value=2.8)                  29   3.1  
SB_46623| Best HMM Match : LEA_2 (HMM E-Value=9.9)                     29   4.1  
SB_45993| Best HMM Match : TEP1_N (HMM E-Value=0.48)                   29   4.1  
SB_15021| Best HMM Match : Zona_pellucida (HMM E-Value=0)              29   5.5  
SB_48859| Best HMM Match : TBC (HMM E-Value=7.1e-12)                   28   7.2  
SB_38173| Best HMM Match : PAN (HMM E-Value=0.0013)                    28   9.5  
SB_17457| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.26)           28   9.5  
SB_10593| Best HMM Match : SDF (HMM E-Value=0)                         28   9.5  
SB_9701| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.5  
SB_7844| Best HMM Match : RasGEF (HMM E-Value=0.00058)                 28   9.5  
SB_2155| Best HMM Match : RepA1_leader (HMM E-Value=0.86)              28   9.5  

>SB_14318| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 341

 Score =  132 bits (318), Expect = 4e-31
 Identities = 82/230 (35%), Positives = 120/230 (52%), Gaps = 11/230 (4%)
 Frame = -1

Query: 711 QNYSFDQTQGTIPANNNQYYNPNFFTPAPIPGEATSXXXXXXXXXXXXXXXXXXDRILE- 535
           Q Y ++Q         N YY+PN       PG +                      +LE 
Sbjct: 120 QGYDYNQQNQYDQHAGNYYYDPNVHQQQDYPGNSFQMGGVKQVDEAHTSGFEDEPPLLEE 179

Query: 534 ----------KTLAVLNPFHGQSKADDANFLLRDTDIAGPIXXXXXXXXXXXLSGNKAHF 385
                     KTL+VL+P     K  D + ++ DTD+ GP+           L G K  F
Sbjct: 180 LGLNLDHIWQKTLSVLHPL----KPTDQH-IMDDTDLGGPLLFCLAFGGILLLHG-KVTF 233

Query: 384 GFVYGLSMMSVILMYFLLSLMSHTEGVFTILSVASVLGYCMLPMVVLAGLGIFISLEGTV 205
           G++YG S++  I MY +L+LMS  +  F+  +V SVLGYC+LPMV L+ + + +SL+G +
Sbjct: 234 GYIYGYSLLGCIAMYAILNLMSLADVSFS--TVVSVLGYCLLPMVGLSAIALIVSLQGAL 291

Query: 204 GLSISAVAVIWSALSASRLFVTMSGDAEQRPLIAYPCALINGVFALLVLF 55
           G  ++AV + W +L +S+LFV   G   Q+PL+AYPCAL+ GVFALL +F
Sbjct: 292 GSVLTAVTIGWCSLVSSKLFVIALGMDHQQPLVAYPCALLYGVFALLTVF 341


>SB_24811| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 619

 Score = 36.3 bits (80), Expect = 0.027
 Identities = 20/56 (35%), Positives = 27/56 (48%)
 Frame = -3

Query: 271 LLYASYGCLSRFRNIYLFRRYCRPQYISCCSNLVCFVCKSTICHYVRRCRAKTINC 104
           LLY  Y CLS    + L  RYC    + CC ++    C S   HY   C + T++C
Sbjct: 321 LLYVHY-CLSVTVCLLLSVRYCLSVTVHCCLSVTVHYCLSVTVHY---CLSVTVHC 372


>SB_18564| Best HMM Match : ShTK (HMM E-Value=6.5)
          Length = 348

 Score = 32.7 bits (71), Expect = 0.34
 Identities = 32/110 (29%), Positives = 45/110 (40%), Gaps = 8/110 (7%)
 Frame = -3

Query: 448 SHSILPSLGSLPFSIRQ*SPFWVCVWTVNDVCYIDVFFTFTNESYRRCFY---YS--*CC 284
           ++S+L       F +   S F VC +++  VC   VF    N  +R C Y   YS    C
Sbjct: 67  AYSVLRVCAYSVFRVCASSVFRVCAYSIFRVCAYSVFRVCVNSVFRVCAYSGAYSVLRVC 126

Query: 283 QCTGLLYASYGCLSRFR-NIYLFRRYCRPQYISCC--SNLVCFVCKSTIC 143
            C+     +Y   S FR  +Y   R C      C   S+L C    S+ C
Sbjct: 127 ACSVFRVCAY---SVFRVCVYFVFRVCAYSVSECALISSLECAFIPSSEC 173


>SB_42838| Best HMM Match : 7tm_1 (HMM E-Value=9.4e-39)
          Length = 747

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = -1

Query: 255 MVVLAGLGIFISLEGTVGLSISAVAVIWSALS 160
           +VVL  L  F+S+ G +G ++S + V+WS  S
Sbjct: 307 LVVLIALQFFVSIVGIIG-NVSVIRVVWSTRS 337


>SB_40745| Best HMM Match : CLN3 (HMM E-Value=1.9e-08)
          Length = 380

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = -1

Query: 345 MYFLLSLMSHTEGVFTILSVASVLGYCMLPMVVLAGLGIFISLEG-TVGLSISAVAVIW 172
           +YF+LSL          +   ++LG  +  MV L G G  +   G TVG+ I  VA++W
Sbjct: 60  VYFVLSLFMPC-----FIDRVALLGRALAAMV-LTGAGFIVMASGMTVGIRIVGVALVW 112


>SB_55713| Best HMM Match : zf-C3HC4 (HMM E-Value=2.8)
          Length = 129

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 2/78 (2%)
 Frame = -3

Query: 316 YRRCFYYS*CCQCTGLLYASYGCLSRFRNIY--LFRRYCRPQYISCCSNLVCFVCKSTIC 143
           Y R    S C QC  ++  +  C+S +      +    C  +Y+     L+C  C   + 
Sbjct: 34  YVRSVDVSLCAQCVRVVICAV-CVSLYAQCVRVVMCAVCACRYVRSVCLLLCAQCLRVVI 92

Query: 142 HYVRRCRAKTINCIPLCA 89
             V  CR     C+ LCA
Sbjct: 93  CAVCACRYVRSVCVSLCA 110


>SB_46623| Best HMM Match : LEA_2 (HMM E-Value=9.9)
          Length = 196

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 11/23 (47%), Positives = 18/23 (78%)
 Frame = -1

Query: 261 LPMVVLAGLGIFISLEGTVGLSI 193
           LP+++   +G+ +SLEGTVGL +
Sbjct: 81  LPVLLEVNVGLHVSLEGTVGLPV 103


>SB_45993| Best HMM Match : TEP1_N (HMM E-Value=0.48)
          Length = 369

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 19/71 (26%), Positives = 29/71 (40%)
 Frame = -3

Query: 301 YYS*CCQCTGLLYASYGCLSRFRNIYLFRRYCRPQYISCCSNLVCFVCKSTICHYVRRCR 122
           + S C QC  ++  +  C+          RY    ++S C+      C   + H VRRCR
Sbjct: 156 WMSLCAQCVDVVMRT--CVDVVMRTVRGCRYAHSAWMSLCTQ-----CVDVVMHTVRRCR 208

Query: 121 AKTINCIPLCA 89
                 + LCA
Sbjct: 209 YAHSAWMSLCA 219


>SB_15021| Best HMM Match : Zona_pellucida (HMM E-Value=0)
          Length = 751

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = +2

Query: 161 DKADQITATADILRPTVPSKEINIPKPAKTTIGSIQ*PSTLAT 289
           D+  QI    DI  PT+P      P P  T   +   P+T +T
Sbjct: 169 DRTGQICTDTDIPPPTLPPPPTTTPPPTTTQATTTNPPTTTST 211


>SB_48859| Best HMM Match : TBC (HMM E-Value=7.1e-12)
          Length = 660

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +2

Query: 80  PLISAQGYAINGLCSASPDIVTNSRLADKADQITATAD 193
           PL+     A++G  SA  D+ ++  L DKAD+   T++
Sbjct: 32  PLLREDSDAVDGELSAVSDVESSDLLYDKADESAKTSE 69


>SB_38173| Best HMM Match : PAN (HMM E-Value=0.0013)
          Length = 340

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 17/59 (28%), Positives = 24/59 (40%)
 Frame = +2

Query: 77  TPLISAQGYAINGLCSASPDIVTNSRLADKADQITATADILRPTVPSKEINIPKPAKTT 253
           TP  + Q  +     S  P   T    + KA + T      +PT P+K     KP K+T
Sbjct: 146 TPTSTKQPSSSRPFKSTKPTKSTKPTKSTKATKSTKPTKSTKPTKPTKPTKSTKPTKST 204


>SB_17457| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.26)
          Length = 889

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
 Frame = -1

Query: 252 VVLAGLGIFISLEGT-VGLSISA-VAVIWSALSASRLFVTMSGDAEQRPLIAYPCALING 79
           +VL GL IF++   + V  ++S  + ++W  L++  L  T + D  +  L  YP      
Sbjct: 600 IVLPGLLIFLNTFASHVLFAVSLPLLLLWRQLTSRLLTKTDANDKGEFSLSDYPQLFREQ 659

Query: 78  VFALLVLF 55
           VFALL+ +
Sbjct: 660 VFALLLRY 667


>SB_10593| Best HMM Match : SDF (HMM E-Value=0)
          Length = 629

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
 Frame = -1

Query: 312 EGVFTILSV-ASVLGYCMLPMVVLAGLGIFISLEGTVGLSISAVAVIWSA---LSASRLF 145
           E V T+L+  A+ +G   +P    AGL   + +   VGL    +A+IWS    +   R  
Sbjct: 247 EIVTTVLTATAAAIGAAGIPS---AGLVTMLIVLQAVGLPTDDIALIWSVDWFIDRFRTM 303

Query: 144 VTMSGDA 124
           V ++GDA
Sbjct: 304 VNITGDA 310


>SB_9701| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 535

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +2

Query: 77  TPLISAQGYAINGLCSASPDIVTNSRLADKADQITATADILRPT-VPSKEIN 229
           TP + +    +NGLC+ S  ++ ++ +   AD   A   +  P  +PS+  N
Sbjct: 431 TPAVDSAPLPVNGLCTISDPLLGHALICITADMECAARSVSIPNIIPSRAGN 482


>SB_7844| Best HMM Match : RasGEF (HMM E-Value=0.00058)
          Length = 1299

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = -1

Query: 729 TFPTDXQNYSFDQTQGTIPANNNQYYNPNFFTPAPIPGE 613
           T P   +      T GT P  N+Q  + N +  AP+  E
Sbjct: 274 TAPVQNEQEGSGDTDGTTPVQNDQEVSGNTYDTAPVQNE 312


>SB_2155| Best HMM Match : RepA1_leader (HMM E-Value=0.86)
          Length = 427

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +1

Query: 700 GIVLXIRGKSLKSKSGQLFQSI 765
           GI+L +RGK+ K K G LF+ +
Sbjct: 85  GIILNVRGKNKKEKLGGLFKGL 106


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,019,591
Number of Sequences: 59808
Number of extensions: 489126
Number of successful extensions: 1103
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 990
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1099
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2083999566
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)