Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10l16r
(768 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g36300.1 68415.m04455 integral membrane Yip1 family protein c... 96 3e-20
At3g52760.1 68416.m05813 integral membrane Yip1 family protein c... 89 4e-18
At5g65850.1 68418.m08287 F-box family protein 33 0.21
At5g22450.1 68418.m02618 expressed protein 30 1.5
At5g15170.1 68418.m01777 tyrosyl-DNA phosphodiesterase-related s... 30 1.5
At4g17150.1 68417.m02581 expressed protein 30 1.5
At4g28050.1 68417.m04024 senescence-associated protein, putative... 29 2.6
At4g18390.1 68417.m02729 TCP family transcription factor, putati... 29 4.5
At2g44880.1 68415.m05587 pentatricopeptide (PPR) repeat-containi... 29 4.5
At1g19450.1 68414.m02423 integral membrane protein, putative / s... 29 4.5
At2g31470.1 68415.m03844 F-box family protein contains F-box dom... 28 6.0
At4g10520.1 68417.m01724 subtilase family protein contains simil... 28 7.9
>At2g36300.1 68415.m04455 integral membrane Yip1 family protein
contains Pfam domain, PF04893: Yip1 domain
Length = 255
Score = 95.9 bits (228), Expect = 3e-20
Identities = 57/166 (34%), Positives = 99/166 (59%), Gaps = 2/166 (1%)
Frame = -1
Query: 546 RILEKTLAVLNPFHGQSKADDANFLLRDTDIAGPIXXXXXXXXXXXLSGNKAHFGFVYGL 367
+I +KT ++LNPF + + A + +D+D++GPI L+G K FG + G
Sbjct: 97 QIWKKTRSILNPF----RINQA--VHKDSDLSGPIFLYLALCLFQLLAG-KIQFGVILGW 149
Query: 366 SMMSVILMYFLLSLMSHTEGVFTILSVASVLGYCMLPMVVLAGLGIFISL-EGTVGLSIS 190
++S I +Y + ++++ G + + S++GYC+LP+VVL+ + +F+ G V ++
Sbjct: 150 IVVSSIFLYVVFNMLAGRNGNLNLHTCTSLVGYCLLPVVVLSAVSLFVPQGAGPVRFVLA 209
Query: 189 AVAVIWSALSASRLFVTMS-GDAEQRPLIAYPCALINGVFALLVLF 55
A+ V+WS + S L V+++ G E R LIAY C LI +F+LLV+F
Sbjct: 210 ALFVLWSTRACSTLVVSLADGGEEHRGLIAYACFLIYTLFSLLVIF 255
>At3g52760.1 68416.m05813 integral membrane Yip1 family protein
contains Pfam domain, PF04893: Yip1 domain
Length = 257
Score = 88.6 bits (210), Expect = 4e-18
Identities = 52/166 (31%), Positives = 92/166 (55%), Gaps = 2/166 (1%)
Frame = -1
Query: 546 RILEKTLAVLNPFHGQSKADDANFLLRDTDIAGPIXXXXXXXXXXXLSGNKAHFGFVYGL 367
+I +KT ++LNPF +D+D++GPI L+G K FG + G
Sbjct: 99 QIWKKTRSILNPFRINQTVH------KDSDLSGPIFLYLALCLFQLLAG-KIQFGVILGW 151
Query: 366 SMMSVILMYFLLSLMSHTEGVFTILSVASVLGYCMLPMVVLAGLGIFISL-EGTVGLSIS 190
++S I +Y + ++++ G + + S++GY +LP+V+L+ + +F+ G V +
Sbjct: 152 VVVSSIFLYIVFNMLAGRNGNLNLHTCTSLVGYSLLPVVILSAVSLFVPQGAGPVRFVLG 211
Query: 189 AVAVIWSALSASRLFVTMS-GDAEQRPLIAYPCALINGVFALLVLF 55
A V+W+ + S L V+++ G E R LI+Y C LI +F+LLV+F
Sbjct: 212 AAFVLWATRACSNLVVSLADGGEEHRGLISYACFLIYTLFSLLVIF 257
>At5g65850.1 68418.m08287 F-box family protein
Length = 392
Score = 33.1 bits (72), Expect = 0.21
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -3
Query: 286 CQCTGLLYASYGCLSRFRNIYLFRRYCRPQYISCC 182
C+C L+ S C F ++L R RPQ + CC
Sbjct: 55 CRCVSKLWISVICRQDFTELFLTRSLHRPQLLFCC 89
>At5g22450.1 68418.m02618 expressed protein
Length = 1180
Score = 30.3 bits (65), Expect = 1.5
Identities = 33/125 (26%), Positives = 50/125 (40%), Gaps = 7/125 (5%)
Frame = +2
Query: 170 DQITATADIL--RPTVPSKEINIPKPAKTTIGSIQ*P---STLATLRIVKTPSV*LISES 334
+Q+ T DI+ R K + + K A+TT+ ++ S LA +++ S S S
Sbjct: 164 NQVPRTQDIMAQRSEERKKMLGLNKRARTTVADVRGDARISALARQHVIEKGSDSPPSVS 223
Query: 335 KKYINITDIIDS-PYTNPKWALLPDRKRQTAKARQNAMGPAMSVSLSKKFASSAL-DCPW 508
+ + I + I P W RKR A M P V K A S L C
Sbjct: 224 GESVRIEEKIRRLPVGGEGWETRMKRKRSVATLGNRIMNPEQRVMQPKPTADSKLRSCDS 283
Query: 509 KGLRT 523
+ R+
Sbjct: 284 QNFRS 288
>At5g15170.1 68418.m01777 tyrosyl-DNA phosphodiesterase-related
similar to Chain A, Crystal Structure Of Human
Tyrosyl-Dna Phosphodiesterase (Tdp1) [Homo sapiens]
GI:20150581
Length = 605
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = +3
Query: 495 WIVHGKD*EPLMFSPEFYQGIFQVRPRGVAHQTHSAHL 608
WI+H K P+ F + IF V PRGV H+A+L
Sbjct: 221 WILH-KPRLPISFGTHHSKAIFLVYPRGVRVVVHTANL 257
>At4g17150.1 68417.m02581 expressed protein
Length = 402
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = -3
Query: 274 GLLYASYGCLSRFRNIYLFRRYCRPQYISCCSNLVCFVCKSTICHYVRRC 125
GL S G ++RFR LF+ Y Q + SNL+ S+ Y+ C
Sbjct: 108 GLWGRSMGAVTRFRPRLLFQLYLGMQAETNSSNLITLTSFSSAMRYLHNC 157
>At4g28050.1 68417.m04024 senescence-associated protein, putative
similar to senescence-associated protein 5 [Hemerocallis
hybrid cultivar] gi|3551954|gb|AAC34855
Length = 263
Score = 29.5 bits (63), Expect = 2.6
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = -1
Query: 339 FLLSLMSHTEGVFTILSVASVLG-YCMLPMVVLAGLGIFISLEGTVGLSISAVAVIWSAL 163
FLLS+ + G++ + A+ + PMVVL +F+S+ G VG ++W L
Sbjct: 17 FLLSIPILSAGIWLGKNAATECERFLDKPMVVLGIFLMFVSIAGLVGACCRVSCLLWLYL 76
Query: 162 SASRLFVTM 136
A L + +
Sbjct: 77 FAMFLLILL 85
>At4g18390.1 68417.m02729 TCP family transcription factor, putative
similar to TFPD (GI:6681577) [Arabidopsis thaliana];
teosinte branched1 protein - Zea mays, PIR2:T04347
Length = 365
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = -1
Query: 765 NTLEQLPRLRFQTFPTDXQNYSFDQTQGTIPANN 664
+++ +LP L FPTD +N+ +QT T+ AN+
Sbjct: 95 DSISELPSLNNTHFPTDDENHQ-NQTLTTVAANS 127
>At2g44880.1 68415.m05587 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 555
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 98 GYAINGLCSASPDIVTNSRLADKADQITATADI 196
GYA+NG A+ D+ + +K D+IT A I
Sbjct: 349 GYALNGNARAALDLFVTMMIEEKPDEITMLAVI 381
>At1g19450.1 68414.m02423 integral membrane protein, putative /
sugar transporter family protein similar to GB:U43629
GI:1209756 integral membrane protein from [Beta
vulgaris]; contains Pfam profile PF00083: major
facilitator superfamily protein; contains TIGRfam
TIGR00879: Sugar transporter
Length = 488
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/47 (29%), Positives = 29/47 (61%)
Frame = -1
Query: 369 LSMMSVILMYFLLSLMSHTEGVFTILSVASVLGYCMLPMVVLAGLGI 229
+S++ V + ++L +S ++ ILS+ SV+G ++ MV+ LG+
Sbjct: 359 ISLVIVAVAFYLKEFVSPDSNMYNILSMVSVVG--VVAMVISCSLGM 403
>At2g31470.1 68415.m03844 F-box family protein contains F-box domain
Pfam:PF00646
Length = 387
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -3
Query: 286 CQCTGLLYASYGCLSRFRNIYLFRRYCRPQYISCC 182
C+C L+AS L F +YL + RP+ + C
Sbjct: 45 CRCVSKLWASILRLPYFTELYLTKSCARPRLLFAC 79
>At4g10520.1 68417.m01724 subtilase family protein contains
similarity to subtilase; SP1 GI:9957714 from [Oryza
sativa]
Length = 756
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = -1
Query: 288 VASVLGYCMLPMVVLAGLGIFISLEGTVGLSISAVAVIWS 169
VAS +G LP V GLG + G G+ I+ WS
Sbjct: 222 VASTIGGSFLPNVSYVGLGRGTARGGAPGVHIAVYKACWS 261
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,201,262
Number of Sequences: 28952
Number of extensions: 339023
Number of successful extensions: 898
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 874
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 896
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1721869952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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